Methods of modulating immune activity

ABSTRACT

In one aspect, the invention provides methods of increasing immune response by administering postcellular signaling factors produced by cells exposed to a stress condition. In one aspect, the invention provides methods of increasing immune response by administering in combination (a) a Stimulator of Interferon Genes (STING) agonist and (b) a purinergic receptor agonist. The increase in immune response may be used, for example, for treatment of infection or cancer. The invention also provides screening assays for identification of compounds that induce production of postcellular signaling factors which are also immunostimulatory agents. The invention further provides methods for identifying postcellular signaling factors with immunostimulatory activity. In another aspect, the invention provides methods of decreasing immune response by administering to a cell, tissue or subject a purinergic receptor antagonist alone or in combination with a Stimulator of Interferon Genes (STING) antagonist.

RELATED APPLICATIONS

This application is a continuation of U.S. Non-Provisional applicationSer. No. 17/313,296, filed May 6, 2021 which, in turn, is a continuationunder 35 U.S.C. § 111(a) of International Application No.PCT/US2020/031190, filed May 1, 2020 which, in turn, claims priority toU.S. Provisional Application No. 62/843,266, filed on May 3, 2019, U.S.Provisional Application No. 62/857,812, filed on Jun. 5, 2019, U.S.Provisional Application No. 62/857,797, filed on Jun. 5, 2019, and U.S.Provisional Application No. 62/857,809, filed on Jun. 5, 2019, theentire contents of each of which are expressly incorporated herein byreference.

BACKGROUND

In multicellular organisms, cell death is a critical and active processthat is believed to maintain tissue homeostasis and eliminatepotentially harmful cells.

SUMMARY OF THE INVENTION

In certain aspects, the disclosure relates to a method of increasingimmune activity in a target cell, tissue or subject, the methodcomprising administering to the target cell, tissue or subject, incombination (a) a Stimulator of Interferon Genes (STING) agonist and (b)a purinergic receptor agonist, wherein the STING agonist and thepurinergic receptor agonist are administered in an amount sufficient toincrease the immune activity relative to a cell, tissue or subject thatis not treated with the STING agonist and/or the purinergic receptoragonist. In one embodiment, the STING agonist and the purinergicreceptor agonist act synergistically.

In certain aspects, the disclosure relates to a method of increasing thelevel or activity of RF or STING in a target cell, tissue or subject,comprising administering to the target cell, tissue or subject, incombination (a) a Stimulator of Interferon Genes (STING) agonist and (b)a purinergic receptor agonist, wherein the STING agonist and thepurinergic receptor agonist are administered in an amount sufficient toincrease the level or activity of RF or STING relative to a cell, tissueor subject that is not treated with the STING agonist and/or thepurinergic receptor agonist. In one embodiment, the STING agonist andthe purinergic receptor agonist act synergistically. In one embodiment,the subject is in need of an increased level or activity of RF or STING.In one embodiment, the level or activity of RF or STING is increased byat least 10%, 20%, 30%, 40%, 50%, 60%, 70%, 80%, 90% or 100%, or by atleast 2-fold, 4-fold, 6-fold, 8-fold, or 10-fold relative to a cell,tissue or subject that is not treated with the STING agonist and/or thepurinergic receptor agonist.

In certain aspects, the disclosure relates to a method of treating asubject in need of increased immune activity, the method comprisingadministering to the subject, in combination (a) a Stimulator ofInterferon Genes (STING) agonist and (b) a purinergic receptor agonist,wherein the STING agonist and the purinergic receptor agonist areadministered in an amount sufficient to increase the immune activity inthe subject relative to a subject that is not treated with the STINGagonist and/or the purinergic receptor agonist. In one embodiment, theSTING agonist and the purinergic receptor agonist act synergistically.In one embodiment, the subject has cancer. In one embodiment, thesubject has a chronic infection. In embodiments, the chronic infectionis selected from HIV infection, HCV infection, HBV infection, HPVinfection, Hepatitis B infection, Hepatitis C infection, EBV infection,CMV infection, TB infection, and infection with a parasite.

In certain aspects, the disclosure relates to a method of treating asubject diagnosed with cancer, comprising administering to the subject,in combination (a) a Stimulator of Interferon Genes (STING) agonist and(b) a purinergic receptor agonist, thereby treating the cancer in thesubject. In one embodiment, the STING agonist and the purinergicreceptor agonist act synergistically. In one embodiment, a response ofthe cancer to treatment is improved relative to a treatment with theSTING agonist alone or the purinergic receptor agonist alone. In oneembodiment, the response is improved, e.g., in a population of subjects,by at least 5%, at least 10%, at least 15%, at least 20%, at least 30%,at least 40%, at least 50%, at least 60%, at least 70%, or at least 80%relative to treatment with the STING agonist alone or the purinergicreceptor agonist alone. In one embodiment, the response comprises anyone or more of reduction in tumor burden, reduction in tumor size,inhibition of tumor growth, achievement of stable cancer in a subjectwith a progressive cancer prior to treatment, increased time toprogression of the cancer, and increased time of survival. In oneembodiment, the cancer is a cancer responsive to an immune checkpointtherapy. In one embodiment, the cancer is selected from a carcinoma,sarcoma, lymphoma, melanoma, and leukemia.

In one embodiment, the STING agonist is a cyclic dinucleotide. In oneembodiment, the cyclic dinucleotide is selected from the groupconsisting of cGAMP, 2′3′-cGAMP, 3′3′-cGAMP, 3′3′-cGAMP-F, c-di-GMP,c-di-GMP-F, Rp/Sp, MK-1454, ADU-S100 (also known as ML RR-S2 CDA orMIW815), and Disodium dithio-(RP, RP)-[cyclic [A(2′,5′)pA(3′,5′)p]][Rp,Rp]-Cyclic(adenosine-(2′,5′)monophosphorothioateadenosine-(3′,5′)-monophosphorothioate) (also knownas disodium ADU-S100). In one embodiment, the STING agonist is aflavonoid. In one embodiment, the flavonoid is selected from the groupconsisting of 10-(carboxymethyl)-9(10H)acridone (CMA),5,6-Dimethylxanthenone-4-acetic acid (DMXAA) or vadimezan, methoxyvone,6, 4′-dimethoxyflavone, 4′-methoxyflavone, 3′, 6′-dihydroxyflavone, 7,2′-dihydroxyflavone, daidzein, formononetin, retusin 7-methyl ether,xanthone, or any combination thereof. In one embodiment, the STINGagonist is an amidobenzimidazole compound or a dimericamidobenzimidizole compound. In one embodiment, the STING agonist isDNA. In one embodiment, the STING agonist is a type I interferon (IFN).In one embodiment, the type I IFN is interferon-β or interferon-α.

In one embodiment, the purinergic receptor agonist is a small molecule.In one embodiment, the purinergic receptor agonist is a cyclicdinucleotide. In one embodiment, the purinergic receptor agonist is a P2receptor agonist. In one embodiment, the purinergic receptor agonist isa P2Y2, P2Y4 or P2Y6 receptor agonist. In one embodiment, the purinergicreceptor agonist is a nucleotide-based compound represented by one ofthe following structural formulas:

In one embodiment, the purinergic receptor agonist is a nucleotide-basedcompound represented by one of the following structural formulas:

or a pharmaceutically acceptable salt, free acid, an analogue, aregioisomer, a stereoisomer or a tautomer thereof wherein X¹, X² and X³,for each instance is independently selected from O, S, halogen, imido,methyl or methylene (as valency permits), ethyl or ethylene (as valencypermits), halomethyl or halomethylene (as valency permits), haloethyl orhaloethylene (as valency permits), wherein at least one instance of X¹,X² and X³ is O or S; A¹ and A² are each independently O or S; R isselected from O, S, methoxy, thiomethoxy, ethoxy, and thioethoxy; and Aris an optionally substituted monocyclic or bicyclic heteroaryl having atleast one nitrogen atom (e.g., 1, 2, 3 or 4) and optionally one or moreheteroatoms selected from O and S; and wherein n is 1, 2 or 3,preferably 2 or 3, preferably 3.

or a pharmaceutically acceptable salt, free acid, an analogue, aregioisomer, a stereoisomer or a tautomer thereof wherein X¹ and X², foreach instance is independently selected from O, S, halogen, imido,methyl or methylene (as valency permits), ethyl or ethylene (as valencypermits), halomethyl or halomethylene (as valency permits), haloethyl orhaloethylene (as valency permits), wherein at least one instance of X¹and X² is O or S; A¹ and A² are each independently O or S; R is selectedfrom O, S, methoxy, thiomethoxy, ethoxy, and thioethoxy; and Ar¹ and Ar²are each and independently an optionally substituted monocyclic orbicyclic heteroaryl having at least one nitrogen atom (e.g., 1, 2, 3 or4) and optionally one or more heteroatoms selected from O and S; n is aninteger from 1 to 20.

In one embodiment, Ar, Ar¹ and Ar² in the two structural formulasdescribed above for nucleotide-based purinergic receptor are eachindependently selected from the group consisting of

In one embodiment, the purinergic agonist is a compound selected fromthe following;

or a pharmaceutically acceptable salt, free acid, an analogue, aregioisomer, a stereoisomer or a tautomer thereof.

In one particular embodiment, the purinergic receptor agonist is a P2Y2,P2Y4 or P2Y6 receptor agonist and is a compound selected from thefollowing:

or a pharmaceutically acceptable salt, free acid, an analogue, aregioisomer, a stereoisomer or a tautomer thereof.

In one embodiment, the purinergic receptor agonist is a compoundrepresented by the following structural formula, or a pharmaceuticallyacceptable salt, free acid, an analogue, a regioisomer, a stereoisomeror a tautomer thereof.

In one embodiment, the purinergic receptor agonist is selected from ATPdisodium salt

ATPγS tetralithium salt, BzATP triethylammoniumsalt,α,β-Methyleneadenosine 5′-triphosphate trisodium salt,2-Methylthioadenosine diphosphate trisodium salt, 2-Methylthioadenosinetriphosphate tetrasodium salt, MRS 2693 trisodium salt, MRS 2768tetrasodium salt, MRS 2905,MRS 2957 triethylammonium salt, MRS 4062 triethylammonium salt, NF 546,5-OMe-UDP trisodium salt, PSB 0474, 2-ThioUTP tetrasodium salt, andUTPγS trisodium salt.

In some embodiments, the purinergic receptor agonist is selected fromthe group consisting of ATP, adenosine, cytidine, inosine, uridine,guanosine, AMP, CMP, IMP, GMP, cAMP, UMP, ADP, GDP, CDP, IDP, UDP, CTP,GTP, ITP, UTP and cGMP.

In one embodiment of the methods described herein, the subject is inneed of an increased immune activity. In one embodiment, the subject ishuman. In one embodiment, the STING agonist and the purinergic receptoragonist are administered in an amount sufficient to increase in thecell, tissue or subject one or more of the level or activity of type Iinterferon, the level or activity of TBK1, the level or activity of IRF,the level or activity of NFkB, the level or activity of macrophages, thelevel or activity of monocytes, the level or activity of dendriticcells, the level or activity of T cells, the level or activity of CD4⁺,CD8+ or CD3+ cells, and the level or activity of a pro-immune cytokine.

In one embodiment, the method further comprises administering animmunotherapeutic to the subject. In one embodiment, theimmunotherapeutic is selected from the group consisting of a Toll-likereceptor (TLR) agonist, a cell-based therapy, a cytokine, a cancervaccine, and an immune checkpoint modulator of an immune checkpointmolecule. In one embodiment, the TLR agonist is selected from Coley'stoxin and Bacille Calmette-Guerin (BCG). In one embodiment, the immunecheckpoint molecule is selected from CD27, CD28, CD40, CD122, OX40,GITR, ICOS, 4-1BB, ADORA2A, B7-H3, B7-H4, BTLA, CTLA-4, IDO, KIR, LAG-3,PD-1, PD-L1, PD-L2, TIM-3, and VISTA.

In one embodiment, the immune checkpoint molecule is a stimulatoryimmune checkpoint molecule and the immune checkpoint modulator is anagonist of the stimulatory immune checkpoint molecule. In oneembodiment, the immune checkpoint molecule is an inhibitory immunecheckpoint molecule and the immune checkpoint modulator is an antagonistof the inhibitory immune checkpoint molecule. In one embodiment, theimmune checkpoint modulator is selected from a small molecule, aninhibitory RNA, an antisense molecule, and an immune checkpoint moleculebinding protein. In one embodiment, the immune checkpoint molecule isPD-1 and the immune checkpoint modulator is a PD-1 inhibitor. In oneembodiment, the PD-1 inhibitor is selected from pembrolizumab,nivolumab, pidilizumab, SHR-1210, MEDI0680R01, BBg-A317, TSR-042,REGN2810 and PF-06801591. In one embodiment, the immune checkpointmolecule is PD-L1 and the immune checkpoint modulator is a PD-L1inhibitor. In one embodiment, the PD-L1 inhibitor is selected fromdurvalumab, atezolizumab, avelumab, MDX-1105, AMP-224 and LY3300054. Inone embodiment, the immune checkpoint molecule is CTLA-4 and the immunecheckpoint modulator is a CTLA-4 inhibitor. In one embodiment, theCTLA-4 inhibitor is selected from ipilimumab, tremelimumab, JMW-3B3 andAGEN1884.

In certain aspects, the disclosure relates to a method of increasingimmune activity in a target cell, tissue or subject, the methodcomprising administering to the target cell, tissue or subject acomposition comprising one or more postcellular signaling factorsproduced by cells exposed to a stress condition, wherein the compositionis administered in an amount sufficient to increase the immune activityrelative to a cell, tissue or subject that is not treated with thecomposition.

In certain aspects, the disclosure relates to a method of increasing thelevel or activity of IRF or STING in a cell, tissue or subject,comprising administering to the cell, tissue or subject a compositioncomprising one or more postcellular signaling factors produced by cellsexposed to a stress condition, wherein the composition is administeredin an amount sufficient to increase the level or activity of IRF orSTING relative to a cell, tissue or subject that is not treated with thecomposition. In one embodiment, the subject is in need of an increasedlevel or activity of IRF or STING. In one embodiment, the level oractivity of IRF or STING is increased by at least 10%, 20%, 30%, 40%,50%, 60%, 70%, 80%, 90% or 100%, or by at least 2-fold, 4-fold, 6-fold,8-fold, or 10-fold relative to a cell, tissue or subject that is nottreated with the composition.

In certain aspects, the disclosure relates to a method of treating asubject in need of increased immune activity, the method comprisingadministering to the subject a composition comprising one or morepostcellular signaling factors produced by cells exposed to a stresscondition, wherein the composition is administered in an amountsufficient to increase the immune activity in the subject relative to asubject that is not treated with the composition. In one embodiment, thesubject has cancer. In one embodiment, the subject has a chronicinfection. In embodiments, the chronic infection is selected from HIVinfection, HCV infection, HBV infection, HPV infection, Hepatitis Binfection, Hepatitis C infection, EBV infection, CMV infection, TBinfection, and infection with a parasite.

In certain aspects, the disclosure relates to a method of treating asubject diagnosed with cancer, comprising administering to the subject acomposition comprising one or more postcellular signaling factorsproduced by cells exposed to a stress condition, thereby treating thecancer in the subject.

In certain aspects, the disclosure relates to a method of increasingimmune activity in a target cell, tissue or subject, the methodcomprising administering to the target cell, tissue or subject, incombination (a) a composition comprising one or more postcellularsignaling factors produced by cells exposed to a stress condition, and(b) a Stimulator of Interferon Genes (STING) agonist, wherein thecomposition and the STING agonist are administered in an amountsufficient to increase the immune activity relative to a cell, tissue orsubject that is not treated with the composition and/or the STINGagonist. In one embodiment, the STING agonist is a cyclic dinucleotide.In one embodiment, the cyclic dinucleotide is selected from the groupconsisting of cGAMP, 2′3′-cGAMP, 3′3′-cGAMP, 3′3′-cGAMP-F, c-di-GMP,c-di-GMP-F, Rp/Sp, MK-1454, ADU-S100 (also known as ML-RR-S2 CDA orMIW815), and Disodium dithio-(RP, RP)-[cyclic [A(2′,5′)pA(3′,5′)p]][Rp,Rp]-Cyclic(adenosine-(2′,5′)monophosphorothioateadenosine-(3′,5′)-monophosphorothioate) (also knownas disodium ADU-S100).

In one embodiment, the STING agonist is a flavonoid. In one embodiment,the flavonoid is selected from the group consisting of10-(carboxymethyl)-9(10H)acridone (CMA), 5,6-Dimethylxanthenone-4-aceticacid (DMXAA) or vadimezan, methoxyvone, 6, 4′-dimethoxyflavone,4′-methoxyflavone, 3′, 6′-dihydroxyflavone, 7, 2′-dihydroxyflavone,daidzein, formononetin, retusin 7-methyl ether, xanthone, or anycombination thereof. In one embodiment, the STING agonist is anamidobenzimidazole compound or a dimeric amidobenzimidizole compound. Inone embodiment, the STING agonist is DNA. In one embodiment, the STINGagonist is a type I interferon (IFN). In one embodiment, the type I IFNis interferon-β or interferon-α.

In certain aspects, the disclosure relates to a method of treating asubject diagnosed with cancer, comprising administering to the subjectin combination (a) composition comprising one or more postcellularsignaling factors produced by cells exposed to a stress condition, and(b) a Stimulator of Interferon Genes (STING) agonist, thereby treatingthe cancer in the subject. In one embodiment, a response of the cancerto treatment is improved relative to a treatment with the STING agonistalone or the composition alone. In one embodiment, the response isimproved, e.g., in a population of subjects, by at least 5%, at least10%, at least 15%, at least 20%, at least 30%, at least 40%, at least50%, at least 60%, at least 70%, or at least 80% relative to treatmentwith the STING agonist alone or the composition alone. In oneembodiment, the response comprises any one or more of reduction in tumorburden, reduction in tumor size, inhibition of tumor growth, achievementof stable cancer in a subject with a progressive cancer prior totreatment, increased time to progression of the cancer, and increasedtime of survival. In one embodiment, the STING agonist and thecomposition act synergistically. In one embodiment, the cancer is acancer responsive to an immune checkpoint therapy. In one embodiment,the cancer is selected from a carcinoma, sarcoma, lymphoma, melanoma,and leukemia. In one embodiment, the cancer is selected from the groupconsisting of cervical cancer, breast cancer, pancreatic cancer andreticulosarcoma.

In one embodiment of the methods disclosed herein, the compositioncomprises a cell-free extract prepared from cells exposed to a stresscondition. In one embodiment, the composition does not comprise intactcells. In one embodiment, the composition comprises conditioned mediafrom cells exposed to a stress condition. In one embodiment, thecomposition comprises a functional fraction of the conditioned media. Inone embodiment, the functional fraction is prepared by isolatingmolecules with a molecular weight of 3 kDa or less from the conditionedmedia. In one embodiment, the functional fraction is inhibited by a P2Y2inhibitor. In one embodiment, the one or more postcellular signalingfactors are isolated from the cells.

In one embodiment, the one or more postcellular signaling factorscomprise an agonist of a purinergic receptor. In one embodiment, thepurinergic receptor is P2Y2, P2Y4 or P2Y6. In one embodiment, the one ormore postcellular signaling factors comprise a cyclic dinucleotide.

In one embodiment, the stress condition comprises nutrient deprivation.In one embodiment, nutrient deprivation comprises culturing the cells ina culture medium selected from the group consisting of HBSS and PBS. Inone embodiment, the stress condition comprise exposure to an agent thatinduces regulatory cell death. In one embodiment, the agent that inducesregulatory cell death comprises a chemotherapeutic agent. In oneembodiment, the stress condition does not comprise radiation. In oneembodiment, the stress condition does not comprise UV radiation. In oneembodiment, the stress condition does not comprise exposure to an agentthat induces iron-dependent cellular disassembly. In one embodiment, thecells exposed to a stress condition are allogeneic to the target cell,tissue or subject. In one embodiment, the cells exposed to a stresscondition are autologous to the target cell, tissue or subject. In oneembodiment, the cells exposed to a stress condition are cancer cells. Inone embodiment, the cancer cells are immortalized. In one embodiment,the cancer cells are primary cells isolated from a subject. In oneembodiment, the cells exposed to a stress condition do not compriseleukocytes. In one embodiment, the cells exposed to a stress conditiondo not comprise peripheral blood mononuclear cells (PBMCs). In oneembodiment, the cells exposed to a stress condition do not compriseT-cells. In one embodiment, the cells exposed to a stress condition donot comprise malignant T-cells.

In one embodiment, the subject is in need of an increased immuneactivity. In one embodiment, the subject is human. In one embodiment,the composition is administered in an amount sufficient to increase inthe cell, tissue or subject one or more of the level or activity of typeI interferon, the level or activity of TBK1, the level or activity ofIRF, the level or activity of NFkB, the level or activity ofmacrophages, the level or activity of monocytes, the level or activityof dendritic cells, the level or activity of T cells, the level oractivity of CD4⁺, CD8+ or CD3+ cells, and the level or activity of apro-immune cytokine.

In one embodiment, the method further comprises administering animmunotherapeutic to the subject. In one embodiment, theimmunotherapeutic is selected from the group consisting of a Toll-likereceptor (TLR) agonist, a cell-based therapy, a cytokine, a cancervaccine, and an immune checkpoint modulator of an immune checkpointmolecule. In one embodiment, the TLR agonist is selected from Coley'stoxin and Bacille Calmette-Guerin (BCG). In one embodiment, the immunecheckpoint molecule is selected from CD27, CD28, CD40, CD122, OX40,GITR, ICOS, 4-1BB, ADORA2A, B7-H3, B7-H4, BTLA, CTLA-4, IDO, KIR, LAG-3,PD-1, PD-L1, PD-L2, TIM-3, and VISTA. In one embodiment, the immunecheckpoint molecule is a stimulatory immune checkpoint molecule and theimmune checkpoint modulator is an agonist of the stimulatory immunecheckpoint molecule. In one embodiment, the immune checkpoint moleculeis an inhibitory immune checkpoint molecule and the immune checkpointmodulator is an antagonist of the inhibitory immune checkpoint molecule.In one embodiment, the immune checkpoint modulator is selected from asmall molecule, an inhibitory RNA, an antisense molecule, and an immunecheckpoint molecule binding protein. In one embodiment, the immunecheckpoint molecule is PD-1 and the immune checkpoint modulator is aPD-1 inhibitor. In one embodiment, the PD-1 inhibitor is selected frompembrolizumab, nivolumab, pidilizumab, SHR-1210, MEDI0680R01, BBg-A317,TSR-042, REGN2810 and PF-06801591. In one embodiment, the immunecheckpoint molecule is PD-L1 and the immune checkpoint modulator is aPD-L1 inhibitor. In one embodiment, the PD-L1 inhibitor is selected fromdurvalumab, atezolizumab, avelumab, MDX-1105, AMP-224 and LY3300054. Inone embodiment, the immune checkpoint molecule is CTLA-4 and the immunecheckpoint modulator is a CTLA-4 inhibitor. In one embodiment, theCTLA-4 inhibitor is selected from ipilimumab, tremelimumab, JMW-3B3 andAGEN1884.

In certain aspects, the disclosure relates to a method of screening foran agent that induces production of immunostimulatory postcellularsignaling factors in a cell, the method comprising: (a) providing aplurality of test agents (e.g., a library of test agents); (b)evaluating each of the plurality of test agents for the ability toinduce production of immunostimulatory postcellular signaling factors ina cell. In one embodiment, the evaluating step (b) comprises contactingcells or tissue with each of the plurality of test agents. In oneembodiment, evaluating each of the plurality of test agents for theability to induce production of immunostimulatory postcellular signalingfactors comprises culturing an immune cell together with cells contactedwith the test agent or exposing an immune cell to postcellular signalingfactors produced by cells contacted with the test agent and measuringthe level or activity of NFκB, IRF or STING in the immune cell. In oneembodiment, the immune cell is a THP-1 cell.

In one embodiment, evaluating each of the plurality of test agents forthe ability to induce production of immunostimulatory postcellularsignaling factors comprises culturing T cells together with cellscontacted with the test agent or exposing T cells to postcellularsignaling factors produced by cells contacted with the test agent andmeasuring the activation and proliferation of the T cells.

In certain aspects, the disclosure relates to a method of identifying animmunostimulatory postcellular signaling factor, the method comprising:

(a) exposing a cell to a stress condition;(b) isolating one or more postcellular signaling factors produced by thecell after exposure to the stress condition; and(c) assaying the one or more postcellular signaling factors for theability to stimulate immune response.

In one embodiment, the method further comprises:

i) measuring the level of the one or more postcellular signaling factorsproduced by the cell after exposure to the stress condition;

ii) comparing the level of the one or more postcellular signalingfactors produced by the cell after exposure to the stress condition tothe level of the one or more test agents in a control cell that is notexposed to the stress condition; and

iii) selecting postcellular signaling factors that exhibit increasedlevels in the cell exposed to the stress condition relative to thecontrol cell to generate the one or more postcellular signaling factorsfor assaying in step (c).

In one embodiment, the assaying comprises administering the one or morepostcellular signaling factors to an animal and measuring immuneresponse in the animal. In one embodiment, the assaying comprisestreating an immune cell with the one or more postcellular signalingfactors and measuring the level or activity of NFκB activity in theimmune cell. In one embodiment, the assaying comprises treating T cellswith the one or more postcellular signaling factors and measuring theactivation or proliferation of the T cells. In one embodiment, theassaying comprises contacting an immune cell with the one or morepostcellular signaling factors and measuring the level or activity ofNFκB, IRF or STING in the immune cell. In one embodiment, the immunecell is a THP-1 cell.

In certain aspects the disclosure relates to a method of decreasingimmune activity in a target cell, tissue or subject, the methodcomprising administering to the target cell, tissue or subject apurinergic receptor antagonist, wherein the purinergic receptorantagonist is administered in an amount sufficient to decrease theimmune activity relative to a cell, tissue or subject that is nottreated with the purinergic receptor antagonist. In one embodiment, thesubject is in need of decreased immune activity. In one embodiment, thepurinergic receptor antagonist is administered in an amount sufficientto decrease in the cell, tissue or subject one or more of the level oractivity of NFkB, the level or activity of IRF or STING, the level oractivity of macrophages, the level or activity of monocytes, the levelor activity of dendritic cells, the level or activity of T cells, thelevel or activity of CD4⁺, CD8+ or CD3+ cells, and the level or activityof a pro-immune cytokine.

In certain aspects the disclosure relates to a method of decreasing thelevel or activity of NFkB in a cell, tissue or subject, comprisingadministering to the cell, tissue or subject a purinergic receptorantagonist, wherein the purinergic receptor antagonist is administeredin an amount sufficient to decrease the level or activity of NFkBrelative to a cell, tissue or subject that is not treated with thepurinergic receptor antagonist. In one embodiment, the subject is inneed of a decreased level or activity of NFkB. In one embodiment, thelevel or activity of NFkB is decreased by at least 10%, 20%, 30%, 40%,50%, 60%, 70%, 80%, 90% or 99%, or by at least 2-fold, 4-fold, 6-fold,8-fold, or 10-fold relative to a cell, tissue or subject that is nottreated with the purinergic receptor antagonist.

In certain aspects the disclosure relates to a method of decreasing thelevel or activity of IRF or STING in a cell, tissue or subject,comprising administering to the cell, tissue or subject a purinergicreceptor antagonist, wherein the purinergic receptor antagonist isadministered in an amount sufficient to decrease the level or activityof IRF or STING relative to a cell, tissue or subject that is nottreated with the purinergic receptor antagonist. In one embodiment, thesubject is in need of a decreased level or activity of IRF or STING. Inone embodiment, the level or activity of IRF or STING is increased by atleast 10%, 20%, 30%, 40%, 50%, 60%, 70%, 80%, 90% or 99%, or by at least2-fold, 4-fold, 6-fold, 8-fold, or 10-fold relative to a cell, tissue orsubject that is not treated with the purinergic receptor antagonist.

In certain aspects the disclosure relates to a method of decreasing thelevel or activity of macrophages, monocytes, dendritic cells or T cellsin a tissue or subject, comprising administering to the tissue orsubject a purinergic receptor antagonist, wherein the purinergicreceptor antagonist is administered in an amount sufficient to increasethe level or activity of macrophages, monocytes, dendritic cells or Tcells relative to a tissue or subject that is not treated with thepurinergic receptor antagonist. In one embodiment, the subject is inneed of a decreased level or activity of macrophages, monocytes,dendritic cells or T cells. In one embodiment, the level or activity ofmacrophages, monocytes, dendritic cells, or T cells is decreased by atleast 10%, 20%, 30%, 40%, 50%, 60%, 70%, 80%, 90% or 99%, or by at least2-fold, 4-fold, 6-fold, 8-fold, or 10-fold relative to a tissue orsubject that is not treated with the purinergic receptor antagonist.

In certain aspects the disclosure relates to a method of decreasing thelevel or activity of CD4⁺, CD8+, or CD3+ cells in a tissue or subject,comprising administering to the subject a purinergic receptorantagonist, wherein the purinergic receptor antagonist is administeredin an amount sufficient to decrease the level or activity of CD4⁺, CD8+,or CD3+ cells relative to a tissue or subject that is not treated withthe purinergic receptor antagonist. In one embodiment, the subject is inneed of a decreased level or activity of CD4⁺, CD8+, or CD3+ cells. Inone embodiment, the level or activity of CD4⁺, CD8+, or CD3+ cells isdecreased by at least 10%, 20%, 30%, 40%, 50%, 60%, 70%, 80%, 90% or99%, or by at least 2-fold, 4-fold, 6-fold, 8-fold, or 10-fold relativeto a tissue or subject that is not treated with the purinergic receptorantagonist.

In certain aspects the disclosure relates to a method of decreasing thelevel or activity of a pro-immune cytokine in a cell, tissue or subject,comprising administering to the cell, tissue or subject a purinergicreceptor antagonist, wherein the purinergic receptor antagonist isadministered in an amount sufficient to decrease the level or activityof the pro-immune cytokine relative to a cell, tissue or subject that isnot treated with the purinergic receptor antagonist. In one embodiment,the subject is in need of a decreased level or activity of a pro-immunecytokine. In one embodiment, the level or activity of the pro-immunecytokine is decreased by at least 10%, 20%, 30%, 40%, 50%, 60%, 70%,80%, 90% or 99%, or by at least 2-fold, 4-fold, 6-fold, 8-fold, or10-fold relative to a cell, tissue or subject that is not treated withthe purinergic receptor antagonist. In one embodiment, the pro-immunecytokine is selected from IFN-α, IL-1, IL-12, IL-18, IL-2, IL-15, IL-4,IL-6, TNF-α, IL-17 and GMCSF. In one embodiment of claims A-F, themethod further includes, before the administration, evaluating the cell,tissue or subject for one or more of the level or activity of NFkB; thelevel or activity of macrophages; the level or activity of monocytes;the level or activity of dendritic cells; the level or activity of CD4+cells, CD8+ cells, or CD3+ cells; the level or activity of T cells; andthe level or activity of a pro-immune cytokine. In one embodiment ofclaims A-F, the method further includes, after the administration,evaluating the cell, tissue or subject for one or more of the level oractivity of NFkB; the level or activity of macrophages; the level oractivity of monocytes; the level or activity of dendritic cells; thelevel or activity of CD4+ cells, CD8+ cells or CD3+ cells; the level oractivity of T cells; and the level or activity of a pro-immune cytokine.In embodiments, the pro-immune cytokine is selected from IFN-α, IL-1,IL-12, IL-18, IL-2, IL-15, IL-4, IL-6, TNF-α, IL-17 and GMCSF.

In certain aspects the disclosure relates to a method of treating asubject in need of decreased immune activity, the method comprisingadministering to the subject a purinergic receptor antagonist, whereinthe purinergic receptor antagonist is administered in an amountsufficient to decrease the immune activity in the subject.

In certain aspects the disclosure relates to a method of decreasingimmune activity in a target cell, tissue or subject, the methodcomprising administering to the target cell, tissue or subject, incombination (a) a Stimulator of Interferon Genes (STING) antagonist and(b) a purinergic receptor antagonist, wherein the STING antagonist andthe purinergic receptor antagonist are administered in an amountsufficient to decrease the immune activity relative to a cell, tissue orsubject that is not treated with the STING antagonist and/or thepurinergic receptor antagonist. In one embodiment, the subject is inneed of decreased immune activity. In one embodiment, the STINGantagonist and purinergic receptor antagonist are administered in anamount sufficient to decrease in the cell, tissue or subject one or moreof the level or activity of NFkB, the level or activity of IRF or STING,the level or activity of macrophages, the level or activity ofmonocytes, the level or activity of dendritic cells, the level oractivity of T cells, the level or activity of CD4⁺, CD8+ or CD3+ cells,and the level or activity of a pro-immune cytokine.

In certain aspects the disclosure relates to a method of decreasing thelevel or activity of NFkB in a cell, tissue or subject, comprisingadministering to the cell, tissue or subject, in combination (a) aStimulator of Interferon Genes (STING) antagonist and (b) a purinergicreceptor antagonist, wherein the STING antagonist and the purinergicreceptor antagonist are administered in an amount sufficient to decreasethe level or activity of NFkB relative to a cell, tissue or subject thatis not treated with the STING antagonist and/or the purinergic receptorantagonist. In one embodiment, the subject is in need of a decreasedlevel or activity of NFkB.

In one embodiment, the level or activity of NFkB is decreased by atleast 10%, 20%, 30%, 40%, 50%, 60%, 70%, 80%, 90% or 99%, or by at least2-fold, 4-fold, 6-fold, 8-fold, or 10-fold relative to a cell, tissue orsubject that is not treated with the STING antagonist and/or thepurinergic receptor antagonist.

In certain aspects the disclosure relates to a method of decreasing thelevel or activity of IRF or STING in a cell, tissue or subject,comprising administering to the cell, tissue or subject, in combination(a) a Stimulator of Interferon Genes (STING) antagonist and (b) apurinergic receptor antagonist, wherein the STING antagonist and thepurinergic receptor antagonist are administered in an amount sufficientto decrease the level or activity of IRF or STING relative to a cell,tissue or subject that is not treated with the STING antagonist and/orthe purinergic receptor antagonist. In one embodiment, the subject is inneed of a decreased level or activity of IRF or STING. In oneembodiment, the level or activity of IRF or STING is increased by atleast 10%, 20%, 30%, 40%, 50%, 60%, 70%, 80%, 90% or 99%, or by at least2-fold, 4-fold, 6-fold, 8-fold, or 10-fold relative to a cell, tissue orsubject that is not treated with the STING antagonist and/or thepurinergic receptor antagonist.

In certain aspects the disclosure relates to a method of decreasing thelevel or activity of macrophages, monocytes, dendritic cells or T cellsin a tissue or subject, comprising administering to the tissue orsubject, in combination (a) a Stimulator of Interferon Genes (STING)antagonist and (b) a purinergic receptor antagonist, wherein the STINGantagonist and the purinergic receptor antagonist are administered in anamount sufficient to increase the level or activity of macrophages,monocytes, dendritic cells or T cells relative to a tissue or subjectthat is not treated with the STING antagonist and/or the purinergicreceptor antagonist. In one embodiment, the subject is in need of adecreased level or activity of macrophages, monocytes, dendritic cellsor T cells. In one embodiment, the level or activity of macrophages,monocytes, dendritic cells, or T cells is decreased by at least 10%,20%, 30%, 40%, 50%, 60%, 70%, 80%, 90% or 99%, or by at least 2-fold,4-fold, 6-fold, 8-fold, or 10-fold relative to a tissue or subject thatis not treated with the STING antagonist and/or the purinergic receptorantagonist.

In certain aspects the disclosure relates to a method of decreasing thelevel or activity of CD4⁺, CD8+, or CD3+ cells in a tissue or subject,comprising administering to the subject, in combination (a) a Stimulatorof Interferon Genes (STING) antagonist and (b) a purinergic receptorantagonist, wherein the STING antagonist and the purinergic receptorantagonist are administered in an amount sufficient to decrease thelevel or activity of CD4⁺, CD8+, or CD3+ cells relative to a tissue orsubject that is not treated with the STING antagonist and/or thepurinergic receptor antagonist. In one embodiment, the subject is inneed of a decreased level or activity of CD4⁺, CD8+, or CD3+ cells. Inone embodiment, the level or activity of CD4⁺, CD8+, or CD3+ cells isdecreased by at least 10%, 20%, 30%, 40%, 50%, 60%, 70%, 80%, 90% or99%, or by at least 2-fold, 4-fold, 6-fold, 8-fold, or 10-fold relativeto a tissue or subject that is not treated with the STING antagonistand/or the purinergic receptor antagonist.

In certain aspects the disclosure relates to a method of decreasing thelevel or activity of a pro-immune cytokine in a cell, tissue or subject,comprising administering to the cell, tissue or subject, in combination(a) a Stimulator of Interferon Genes (STING) antagonist and (b) apurinergic receptor antagonist, wherein the STING antagonist and thepurinergic receptor antagonist are administered in an amount sufficientto decrease the level or activity of the pro-immune cytokine relative toa cell, tissue or subject that is not treated with the STING antagonistand/or the purinergic receptor antagonist. In one embodiment, thesubject is in need of a decreased level or activity of a pro-immunecytokine. In one embodiment, the level or activity of the pro-immunecytokine is decreased by at least 10%, 20%, 30%, 40%, 50%, 60%, 70%,80%, 90% or 99%, or by at least 2-fold, 4-fold, 6-fold, 8-fold, or10-fold relative to a cell, tissue or subject that is not treated withthe STING antagonist and/or the purinergic receptor antagonist. In oneembodiment, the pro-immune cytokine is selected from IFN-α, IL-1, IL-12,IL-18, IL-2, IL-15, IL-4, IL-6, TNF-α, IL-17 and GMCSF. In oneembodiment of the methods described herein, the method further includes,before the administration, evaluating the cell, tissue or subject forone or more of the level or activity of NFkB; the level or activity ofmacrophages; the level or activity of monocytes; the level or activityof dendritic cells; the level or activity of CD4+ cells, CD8+ cells, orCD3+ cells; the level or activity of T cells; and the level or activityof a pro-immune cytokine. In one embodiment of the methods describedherein, the method further includes, after the administration,evaluating the cell, tissue or subject for one or more of the level oractivity of NFkB; the level or activity of macrophages; the level oractivity of monocytes; the level or activity of dendritic cells; thelevel or activity of CD4+ cells, CD8+ cells or CD3+ cells; the level oractivity of T cells; and the level or activity of a pro-immune cytokine.In embodiments, the pro-immune cytokine is selected from IFN-α, IL-1,IL-12, IL-18, IL-2, IL-15, IL-4, IL-6, TNF-α, IL-17 and GMCSF.

In certain aspects the disclosure relates to a method of treating asubject in need of decreased immune activity, the method comprisingadministering to the subject, in combination (a) a Stimulator ofInterferon Genes (STING) antagonist and (b) a purinergic receptorantagonist, wherein the STING antagonist and the purinergic receptorantagonist are administered in an amount sufficient to decrease theimmune activity in the subject. In one embodiment of the methodsdescribed herein, the subject has an inflammatory disease or condition.In one embodiment, the inflammatory disease or condition is selectedfrom the group consisting of inflammation, acute organ injury, tissuedamage, sepsis, atherosclerosis, a neurodegenerative disorder, and animmune-related disease or condition. In one embodiment, the inflammationis selected from sterile inflammation, chronic inflammation, and acuteinflammation in response to disease or injury. In one embodiment, theimmune-related disease or condition is an autoimmune disease. In oneembodiment, the autoimmune disease is selected from systemic lupuserythematosus (SLE), rheumatoid arthritis, Type I diabetes, Type IIdiabetes, multiple sclerosis (MS), amyotrophic lateral sclerosis (ALS),graft-vs-host disease (GVHD), psoriasis, and ulcerative colitis. In oneembodiment, the immune-related disease or condition is an allergy orasthma. In one embodiment, the immune-related disease or condition is anautoinflammatory condition. In one embodiment of claims A-N, thepurinergic receptor antagonist is a P2Y receptor antagonist. In oneembodiment, the P2Y receptor antagonist is a P2Y2 receptor antagonist, aP2Y4 receptor antagonist, or a P2Y6 receptor antagonist. In oneembodiment, the purinergic receptor antagonist is a compound selectedfrom the group consisting of

EVT 401, and AFC-5128, and a pharmaceutically acceptable salt, freeacid, an analogue, a regioisomer, a stereoisomer or a tautomer thereof.

In one embodiment, the purinergic receptor antagonist is a P2Y2, P2Y4 orP2Y6 antagonist, and is a compound selected from the group consistingof:

and a pharmaceutically acceptable salt, free acid, an analogue, aregiosomer, a steroisomer or a tautomer thereof.

In one embodiment of the methods described herein, the STING antagonistis a protein, a nucleic acid or a small molecule. In one embodiment, theprotein is an oncoprotein selected from the group consisting of E6, E7,E1A and SV40 Large T antigen. In one embodiment, the nucleic acid is anoncogene encoding an oncoprotein selected from the group consisting ofE6, E7, E1A and SV40 Large T antigen. In one embodiment, the STINGantagonist is a kinase inhibitor. In one embodiment, the kinaseinhibitor is a TBK1 kinase inhibitor. In one embodiment, the TBK1 kinaseinhibitor is selected from the group consisting of staurosporine, BX765and MRT67307. In one embodiment, the STING antagonist is a cyclicdinucleotide (CDN) compound. In one embodiment, the CDN compound isrepresented by the following structural formula:

or a pharmaceutically acceptable salt, a free acid, a regioisomer, astereoisomer or a tautomer thereof wherein Ar, for each instance, isindependently optionally substituted monocyclic or bicyclic heteroarylhaving at least one nitrogen atom (e.g., 1, 2, 3 or 4) and optionallyone or more heteroatoms selected from O and S; wherein R, for eachinstance, is independently hydrogen or an optionally substituted C₁-C₄alkyl; wherein each oxygen atom in the two phosphate groups and the ORgroups is optionally and independently substituted with S; wherein eachOR group and each O⁻ is optionally substituted with a halogen (e.g., F,Cl). In one embodiment, each Ar is independently selected from the groupconsisting of

In one embodiment, the STING antagonist is an imidazole derivative. Inone embodiment, the imidazole derivative is a dimeric compound. In oneembodiment, the dimeric compound is represented by the followingstructural formula:

or a pharmaceutically acceptable salt, a free acid, a regioisomer, astereoisomer or a tautomer thereof wherein one or two of X¹, X² and X³is/are nitrogen while the other(s) is/are carbon; wherein one or two ofX⁴, X⁵ and X⁶ is/are nitrogen while the other(s) is/are carbon; whereinR is an optionally substituted C₁-C₆ alkyl, C₂-C₆ alkenyl or C₂-C₆alkynyl covalently linked to ring A¹ and ring A²; each of rings A¹, A²,B¹ and B² is optionally substituted.

In one embodiment, the STING antagonist is an amido-substitutedbi-heterocyclic compound represented by the following formula:

or a pharmaceutically acceptable salt, a free acid, a regioisomer, astereoisomer or a tautomer thereof the bi-heterocyclic ring isoptionally further substituted; wherein Y is C, O, or S; X¹, X², X³ andX⁴ are each independent C or N; and R1 and R2 are each independently anoptionally substituted alkyl, an optionally substituted alkenyl, anoptionally substituted alkynyl, an optionally substituted cycloalkyl, anoptionally substituted aryl, an optionally substituted heteroaryl, or anoptionally substituted heterocyclyl.

In one embodiment, the STING antagonist is a compound selected from thefollowing:

or a pharmaceutically acceptable salt, a free acid, a regioisomer, astereoisomer or a tautomer thereof.

BRIEF DESCRIPTION OF THE DRAWINGS

FIG. 1A shows IRF transcriptional activity in THP1 monocytes co-culturedwith nutrient-starved HeLa cells. FIG. 1B shows IRF transcriptionalactivity in THP1 monocytes co-cultured with nutrient-starved HeLa cellsor UV-treated HeLa cells.

FIG. 2A shows IRF transcriptional activity in THP1 monocytes treatedwith conditioned medium from nutrient-starved HeLa cells. FIG. 2B showsNFKB activity in THP1 monocytes treated with conditioned medium fromnutrient-starved HeLa cells.

FIG. 3A shows IFN-beta secretion in THP1 monocytes exposed to HeLa/PBSconditioned media in combination with 2′3′-cGAMP. FIG. 3B shows IFN-betasecretion in J774 macrophages exposed to HeLa/PBS conditioned media incombination with 2′3′-cGAMP.

FIG. 4A-4F shows that each cyclic dinucleotide (CDN) displayed IRFinducing activity on its own in THP1-Dual cells, and each of these CDNsalso displayed synergistic activation of IRF when combined with HeLa-PBSconditioned media.

FIG. 5A-5I show conditioned media from several differentnutrient-deprived cells in combination with 2′3′-cGAMP induced IRFactivation in human THP1 monocytes.

FIGS. 6A-6D show induction of IRF activity by cGAMP in combination withHeLa-PBS conditioned media was inhibited by AR-C 118925, which is a P2Y2specific purinergic receptor antagonist.

FIGS. 7A and 7B show the combination of PSB 1114 (a P2Y2 agonist) and2′3′-cGAMP (a STING agonist) induced IRF signaling in human THP1monocytes.

FIGS. 8A and 8B show a combination of the P2Y2 agonist Diquafosol andthe STING agonist cGAMP induced IRF signaling in human THP1 monocytes.

FIG. 9 shows treatment of THP1 monocytes with nutrient starved (PBS)HeLa conditioned media in combination with the STING agonist ADU-S100strongly increased IRF signaling.

FIGS. 10A and 10B show the STING agonist ADU-S100 synergizes with theP2Y2 agonist Diquafosol to induce IRF signaling in human monocytes.

FIG. 11 shows a diagram of the STING pathway. Cytosolic DNA isrecognized by cGAS, which catalyzes the generation of cGAMP. cGAMP bindsto STING and leads to its activation, which involves translocation fromthe ER to perinuclear sites. This translocation results in therecruitment and activation of TBK1 by autophosphorylation. Active TBK1,in turn, phosphorylates the transcription factor IRF3, whichtranslocates to the nucleus to induce transcription of type I IFN genes.See Corrales et al., 2016, J Clin. Invest. 126(7): 2404-2411, the entirecontent of which is incorporated herein by reference.

FIG. 12 shows percent survival in a mouse model of B-cell lymphomatreated with a STING agonist (ADU-S100) and a purinergic receptoragonist (diquafasol tetrasodium), either alone or in combination.Vehicle is PBS administered intratumorally once per day. STING low is 1μg/kg of STING agonist (ADU-S100) administered intratumorally once perday. STING high is 50 μg/kg of STING agonist (ADU-S100) administeredintratumorally once per day. P2Y2 is 10 mg/animal of P2Y2 purinergicreceptor agonist (diquafosol testrasodium) administered intratumorallyonce per day. Time is shown in days.

DETAILED DESCRIPTION

In certain aspects, the present disclosure relates to methods ofincreasing immune activity in a target cell, tissue or subject, themethods comprising administering to the target cell, tissue or subject acomposition comprising one or more postcellular signaling factorsproduced by cells exposed to a stress condition. Applicants havesurprisingly shown that postcellular signaling factors produced by cellsexposed to a stress condition increase immune response as evidenced byincreases in NFKB and IRF activity in immune cells. Accordingly,administration of postcellular signaling factors produced by cellsexposed to a stress condition may be used to treat disorders that wouldbenefit from increased immune activity, such as cancer or an infection.

In certain aspects, the present disclosure relates to methods ofincreasing immune activity in a target cell, tissue or subject, themethods comprising administering to the target cell, tissue or subject,in combination (a) a Stimulator of Interferon Genes (STING) agonist and(b) a purinergic receptor agonist. Applicants have surprisingly foundthat combinations of a STING agonist and a purinergic receptor agonist(e.g., a P2Y receptor agonist, such as a P2Y2, P2Y4 or P2Y6 agonist)unexpectedly and synergistically increase immune response as evidencedby increases in IRF activity in immune cells. Accordingly,administration of combinations of a STING agonist and a purinergicreceptor agonist (e.g., a P2Y receptor agonist, such as a P2Y2, P2Y4 orP2Y6 agonist) may be used to treat disorders that would benefit fromincreased immune activity, such as cancer or an infection.

In certain aspects, the present disclosure relates to methods ofdecreasing immune activity in a cell, tissue or subject comprisingadministering to the cell, tissue or subject, a purinergic receptorantagonist. As discussed above, Applicants have surprisingly found thatcombinations of a STING agonist and a purinergic receptor agonist (e.g.,a P2Y receptor agonist, such as a P2Y2, P2Y4 or P2Y6 agonist)unexpectedly and synergistically increase immune response as evidencedby increases in IRF activity in immune cells. Based on these results, apurinergic receptor antagonist (e.g., a P2Y receptor antagonist, such asa P2Y2, P2Y4 or P2Y6 antagonist), optionally in combination with a STINGantagonist, is expected to decrease immune response by preventing theinduction of immunostimulatory activity. Accordingly, administration ofa purinergic receptor antagonist (e.g., a P2Y receptor antagonist, suchas a P2Y2, P2Y4 or P2Y6 antagonist), optionally in combination with aSTING antagonist, may be used to treat disorders that would benefit fromdecreased immune activity, such as inflammatory diseases.

I. Definitions

The terms “administer”, “administering” or “administration” include anymethod of delivery of a pharmaceutical composition or agent into asubject's system or to a particular region in or on a subject.

As used herein, “administering in combination”, “co-administration” or“combination therapy” is understood as administration of two or moreactive agents using separate formulations or a single pharmaceuticalformulation, or consecutive administration in any order such that, thereis a time period while both (or all) active agents overlap in exertingtheir biological activities. It is contemplated herein that one activeagent (e.g., a postcellular signaling factor) can improve the activityof a second therapeutic agent, for example, can sensitize target cells,e.g., cancer cells, to the activities of the second therapeutic agent orcan have a synergistic effect with the second therapeutic agent.“Administering in combination” does not require that the agents areadministered at the same time, at the same frequency, or by the sameroute of administration. As used herein, “administering in combination”,“co-administration” or “combination therapy” includes administration ofa composition comprising one or more postcellular signaling factorsproduced by cells exposed to a stress condition with one or moreadditional therapeutic agents, e.g., a STING agonist or animmunotherapeutic (e.g. an immune checkpoint modulator). Examples ofSTING agonists and immunotherapeutics are provided herein.

“Cellular disassembly” refers to a dynamic process that reorders anddisseminates the material within a cell and results in the productionand release from the cell of postcellular signaling factors.

As used herein, the terms “increasing” (or “activating”) and“decreasing” refer to modulating resulting in, respectively, greater orlesser amounts, function or activity of a parameter relative to areference. For example, subsequent to administration of a preparationdescribed herein, a parameter (e.g., activation of NFkB, activation ofmacrophages, size or growth of a tumor) may be increased or decreased ina subject by at least 5%, 10%, 15%, 20%, 25%, 30%, 35%, 40%, 45%, 50%,55%, 60%, 65%, 70%, 75%, 80%, 85%, 90%, 95% or 98% or more relative tothe amount of the parameter prior to administration. Generally, themetric is measured subsequent to administration at a time that theadministration has had the recited effect, e.g., at least one day, oneweek, one month, 3 months, 6 months, after a treatment regimen hasbegun. Similarly, pre-clinical parameters (such as activation of NFkB ofcells in vitro, and/or reduction in tumor burden of a test mammal, by apreparation described herein) may be increased or decreased by at least5%, 10%, 15%, 20%, 25%, 30%, 35%, 40%, 45%, 50%, 55%, 60%, 65%, 70%,75%, 80%, 85%, 90%, 95% or 98% or more relative to the amount of theparameter prior to administration.

As used herein, “an anti-neoplastic agent” refers to a drug used for thetreatment of cancer. Anti-neoplastic agents include chemotherapeuticagents (e.g., alkylating agents, antimetabolites, anti-tumorantibiotics, topoisomerase inhibitors, mitotic inhibitorscorticosteroids, and enzymes), biologic anti-cancer agents, and immunecheckpoint modulators.

A “cancer treatment regimen” or “anti-neoplastic regimen” is aclinically accepted dosing protocol for the treatment of cancer thatincludes administration of one or more anti-neoplastic agents to asubject in specific amounts on a specific schedule.

As used herein, an “immune checkpoint” or “immune checkpoint molecule”is a molecule in the immune system that modulates a signal. An immunecheckpoint molecule can be a stimulatory checkpoint molecule, i.e.,increase a signal, or inhibitory checkpoint molecule, i.e., decrease asignal. A “stimulatory checkpoint molecule” as used herein is a moleculein the immune system that increases a signal or is co-stimulatory. An“inhibitory checkpoint molecule”, as used herein is a molecule in theimmune system that decreases a signal or is co-inhibitory.

As used herein, an “immune checkpoint modulator” is an agent capable ofaltering the activity of an immune checkpoint in a subject. In certainembodiments, an immune checkpoint modulator alters the function of oneor more immune checkpoint molecules including, but not limited to, CD27,CD28, CD40, CD122, OX40, GITR, ICOS, 4-1BB, ADORA2A, B7-H3, B7-H4, BTLA,CTLA-4, IDO, KIR, LAG-3, PD-1, PD-L1, PD-L2, TIM-3, and VISTA. Theimmune checkpoint modulator may be an agonist or an antagonist of theimmune checkpoint. In some embodiments, the immune checkpoint modulatoris an immune checkpoint binding protein (e.g., an antibody, antibody Fabfragment, divalent antibody, antibody drug conjugate, scFv, fusionprotein, bivalent antibody, or tetravalent antibody). In otherembodiments, the immune checkpoint modulator is a small molecule. In aparticular embodiment, the immune checkpoint modulator is an anti-PD1,anti-PD-L1, or anti-CTLA-4 binding protein, e.g., antibody or antibodyfragment.

An “immunotherapeutic” as used herein refers to a pharmaceuticallyacceptable compound, composition or therapy that induces or enhances animmune response. Immunotherapeutics include, but are not limited to,immune checkpoint modulators, Toll-like receptor (TLR) agonists,cell-based therapies, cytokines and cancer vaccines.

As used herein, “oncological disorder” or “cancer” or “neoplasm” referto all types of cancer or neoplasm found in humans, including, but notlimited to: leukemias, lymphomas, melanomas, carcinomas and sarcomas. Asused herein, the terms “oncological disorder”, “cancer,” and “neoplasm,”are used interchangeably and in either the singular or plural form,refer to cells that have undergone a malignant transformation that makesthem pathological to the host organism. Primary cancer cells (that is,cells obtained from near the site of malignant transformation) can bereadily distinguished from non-cancerous cells by well-establishedtechniques, particularly histological examination. The definition of acancer cell, as used herein, includes not only a primary cancer cell,but also cancer stem cells, as well as cancer progenitor cells or anycell derived from a cancer cell ancestor. This includes metastasizedcancer cells, and in vitro cultures and cell lines derived from cancercells.

Specific criteria for the staging of cancer are dependent on thespecific cancer type based on tumor size, histological characteristics,tumor markers, and other criteria known by those of skill in the art.Generally, cancer stages can be described as follows: (i) Stage 0,Carcinoma in situ; (ii) Stage I, Stage II, and Stage III, wherein highernumbers indicate more extensive disease, including larger tumor sizeand/or spread of the cancer beyond the organ in which it first developedto nearby lymph nodes and/or tissues or organs adjacent to the locationof the primary tumor; and (iii) Stage IV, wherein the cancer has spreadto distant tissues or organs.

“Postcellular signaling factors” are molecules and cell fragmentsproduced by a cell undergoing cellular disassembly that are ultimatelyreleased from the cell and influence the biological activity of othercells. Postcellular signaling factors can include proteins, peptides,carbohydrates, lipids, nucleic acids, small molecules, and cellfragments (e.g. vesicles and cell membrane fragments).

A “solid tumor” is a tumor that is detectable on the basis of tumormass; e.g., by procedures such as CAT scan, MR imaging, X-ray,ultrasound or palpation, and/or which is detectable because of theexpression of one or more cancer-specific antigens in a sampleobtainable from a patient. The tumor does not need to have measurabledimensions.

A “subject” to be treated by the methods of the invention can meaneither a human or non-human animal, preferably a mammal, more preferablya human. In certain embodiments, a subject has a detectable or diagnosedcancer prior to initiation of treatments using the methods of theinvention. In certain embodiments, a subject has a detectable ordiagnosed infection, e.g., chronic infection, prior to initiation oftreatments using the methods of the invention.

“Therapeutically effective amount” means the amount of a compound that,when administered to a patient for treating a disease, is sufficient toeffect such treatment for the disease. When administered for preventinga disease, the amount is sufficient to avoid or delay onset of thedisease. The “therapeutically effective amount” will vary depending onthe compound, the disease and its severity and the age, weight, etc., ofthe patient to be treated. A therapeutically effective amount need notbe curative. A therapeutically effective amount need not prevent adisease or condition from ever occurring. Instead a therapeuticallyeffective amount is an amount that will at least delay or reduce theonset, severity, or progression of a disease or condition.

As used herein, “treatment”, “treating” and cognates thereof refer tothe medical management of a subject with the intent to improve,ameliorate, stabilize, prevent or cure a disease, pathologicalcondition, or disorder. This term includes active treatment (treatmentdirected to improve the disease, pathological condition, or disorder),causal treatment (treatment directed to the cause of the associateddisease, pathological condition, or disorder), palliative treatment(treatment designed for the relief of symptoms), preventative treatment(treatment directed to minimizing or partially or completely inhibitingthe development of the associated disease, pathological condition, ordisorder); and supportive treatment (treatment employed to supplementanother therapy).

II. Cellular Disassembly and Production of Postcellular SignalingFactors

Cellular disassembly is a dynamic process that re-orders anddisseminates the material within a cell, and which results in theproduction and release of postcellular signaling factors that can have aprofound effect on the biological activity of other cells. Cellulardisassembly may occur during the process of regulated cell death and iscontrolled by multiple molecular mechanisms. Different types of cellulardisassembly result in the production of different postcellular signalingfactors and thereby mediate different biological effects. For example,Applicants have surprisingly shown that exposure of a cell to stress(e.g. nutrient deprivation) can result in the production of postcellularsignaling factors that increase immune response as evidenced byincreases in NFKB and IRF activity in immune cells.

Induction of Cellular Disassembly and Production of PostcellularSignaling Factors by Stress Conditions

The methods provided herein involve stress conditions that inducecellular disassembly and production of postcellular signaling factors.Stress conditions suitable for carrying out the methods of the inventioninclude, but are not limited to, nutrient deprivation, heat, cold,radiation, hypoxia, osmotic pressure, pH, and exposure to an agent thatinduces cellular disassembly.

Nutrient deprivation suitable for inducing cellular disassembly andproducing postcellular signaling factors may comprise culturing cells ina medium lacking sufficient nutrients for sustained cell growth, such asHank's Balanced Salt Solution (HBSS) or phosphate buffered saline (PBS).

Heat stress conditions suitable for inducing cellular disassembly andproducing postcellular signaling factors may comprise exposing a cell toa temperature that is at least 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12,13, 14, 15, 16, 17, 18, 10, 20, 30, 40 or 50° C. higher than the optimalcultivation temperature for the cell, e.g. 37° C. Cold stress conditionssuitable for inducing cellular disassembly and producing postcellularsignaling factors may comprise exposing a cell to a temperature that isat least 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18,10, 20, 30, 40 or 50° C. lower than the optimal cultivation temperaturefor the cell, e.g. 37° C.

Radiation stress conditions suitable for inducing cellular disassemblyand producing postcellular signaling factors may comprise, for example,UV radiation, gamma radiation, X-rays, infrared radiation or microwaves.Methods of treating cells with radiation are known in the art and aredescribed, for example, in US 2012/0045418, which is incorporated byreference herein in its entirety. Cells may be irradiated with, forexample, at least 10, 20, 30, 40 or 50 Gy to induce cellulardisassembly. In some embodiments, the stress condition does not compriseradiation. In some embodiments, the stress condition does not compriseone or more of UV radiation, gamma radiation, X-rays, infrared radiationor microwaves.

Hypoxia is a condition in which a cell is deprived of adequate oxygensupply. Hypoxia stress conditions suitable for inducing cellulardisassembly and producing postcellular signaling factors may compriseexposing a cell to oxygen concentrations that are at least 5%, 10%, 15%,20%, 25%, 30%, 40%, 50%, 60%, 70%, 80% or 90% lower than the optimaloxygen concentration for the cell.

Osmotic pressure may be increased by the addition of salt (e.g. NaCl) tothe culture medium of a cell. Osmotic pressure stress conditionssuitable for inducing cellular disassembly and producing postcellularsignaling factors may comprise exposing a cell to osmotic pressure thatis at least 5%, 10%, 15%, 20%, 25%, 30%, 40%, 50%, 60%, 70%, 80%, 90%,100%, 200%, 300%, 400%, or 500% higher than the optimal osmotic pressurefor a cell.

Cellular disassembly and production of postcellular signaling factorsmay also be induced in a cell by exposing the cell to a pH that ishigher or lower than the optimal pH for the cell. The pH of the culturemedium for the cell may be adjusted by adding acids or bases to theculture medium. In some embodiments, the pH of the culture medium forthe cell is at least 5.0, 5.5, 6.0, 6.5, 7.0, 7.2, 7.5 or 8.0. In someembodiments, the pH of the culture medium for the cell is less than 8.0,7.5, 7.2, 7.0, 6.5, 6.0, 5.5 or 6.0. Any of these values may be used todefine a range for the pH of the culture medium. For example, in someembodiments, the pH of the culture medium is 6.5 to 7.2, 7.5 to 8.0, or6.0 to 6.5.

Agents that induce cellular disassembly and produce postcellularsignaling factors may include small molecules, nucleic acids orproteins. As used herein, a “small molecule” is a molecule that has amolecular weight of less than 1000 Da. In some embodiments, the smallmolecule has a molecular weight of less than 900, 800, 700, 600 or 500Da. In certain embodiments, a small molecule does not include a nucleicacid molecule. In certain embodiments, a small molecule does not includea peptide more than three amino acids in length. Nucleic acids thatinduce cellular disassembly may include, but are not limited to,antisense DNA molecules, antisense RNA molecules, double stranded RNA,siRNA, cDNA, or a Clustered Regularly Interspaced Short PalindromicRepeats (CRISPR)—CRISPR associated (Cas) (CRISPR-Cas) system guide RNA.In some embodiments, the nucleic acid encodes a protein that inducescellular disassembly and release of postcellular signaling factors whenexpressed in a cell. In some embodiments, the nucleic acid inducescellular disassembly and release of postcellular signaling factors byinhibiting expression of one or more genes in the cell. Proteins thatinduce cellular disassembly may include proteins (e.g. monoclonal orpolyclonal antibodies) that inhibit activity of one or more proteins inthe cell.

In some embodiments, the agent that induces cellular disassembly is achemotherapeutic agent or antineoplastic agent, for example, any of thechemotherapeutic agents or antineoplastic agents described herein. Insome embodiments, the agent that induces cellular disassembly is not anagent that induces iron-dependent cellular disassembly, e.g.ferroptosis.

Such stress conditions are capable of inducing the process of cellulardisassembly when present in sufficient amount or intensity and for asufficient period of time. In certain embodiments, the stress conditionthat induces cellular disassembly induces the production of postcellularsignaling factors (e.g. immunostimulatory postcellular signalingfactors) but does not result in cell death. In some embodiments, thestress condition induces cellular disassembly in a portion of a cellpopulation, e.g., 10%, 20%, 30%, 40%, 50%, 60%, 70%, 80%, 90%, 95% ormore cells of the population, such that postcellular signaling factors(e.g., immunostimulatory postcellular signaling factors), are producedby the portion of cells in the cell population. Cell death may occur inall or only a fraction of the portion of cells in the cell population.

According to the methods of the invention, the cells are exposed to thestress condition for a sufficient time to induce production ofpostcellular signaling factors. In some embodiments, the cell is exposedto the stress condition for at least 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 20,30, 40, 50 or 60 minutes. In some embodiments, the cell is exposed tothe stress condition for at least 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12,24, 36, 48, 60 or 72 hours.

Any type of cell may be exposed to the stress conditions describedherein for the production of postcellular signaling factors. In oneembodiment, the cells exposed to a stress condition are cancer cells,for example, cells of any of the cancers described herein. In oneembodiment, the cancer cells are immortalized. In one embodiment, thecancer cells are primary cells isolated from a subject. In someembodiments, the cells exposed to a stress condition do not comprise acancer cell.

In some embodiments, the cells exposed to a stress condition are immunecells, including but not limited to any of the immune cells describedherein. In other embodiments, the cells exposed to a stress condition donot comprise immune cells.

In some embodiments, the cells exposed to a stress condition are bloodcells, e.g. erythrocytes, leukocytes (e.g. peripheral blood mononuclearcells (PBMCs)), or thrombocytes. In other embodiments, the cells exposedto a stress condition do not comprise blood cells. In some embodiments,the cells exposed to a stress condition do not comprise leukocytes. Insome embodiments, the cells exposed to a stress condition do notcomprise peripheral blood mononuclear cells (PBMCs). In someembodiments, the cells exposed to a stress condition do not compriseT-cells. In some embodiments, the cells exposed to a stress condition donot comprise malignant T-cells.

The source of the cells exposed to a stress condition is not limited,and may include cells isolated from the target tissue or subject towhich the composition comprising one or more postcellular signalingfactors is administered. For example, in some embodiments, the cellsexposed to a stress condition are autologous to the target cell, tissueor subject. In some embodiments, the cells exposed to a stress conditionare allogeneic to the target cell, tissue or subject.

Compositions Comprising Postcellular Signaling Factors

According to the methods provided herein, the composition comprising oneor more postcellular signaling factors produced by cells exposed to astress condition may contain various components in addition to the oneor more postcellular signaling factors, depending, for example, on themethod of preparing the composition. For example, in some embodiments,the composition comprises the cells exposed to a stress condition inaddition to the one or more postcelluar signaling factors produced bythese cells, e.g., the cells comprise the one or more postcellularsignaling factors. In other embodiments, the cells exposed to a stresscondition may be separated from the one or more postcellular cellularsignaling fators to prepare the composition. For example, in someembodiments, the composition comprises a cell-free extract prepared fromcells exposed to a stress condition, e.g., the cell-free extractcomprises the one or more postcellular signaling factors. Cell-freeextracts may be prepared, for example, by centrifuging cells suspendedin a culture medium and collecting the supernatant. In one embodiment,the composition comprising one or more postcellular signaling factorsdoes not comprise the cells that were exposed to the stress condition.In one embodiment, the composition comprising one or more postcellularsignaling factors does not comprise intact cells.

The composition comprising the one or more postcellular signalingfactors may be prepared by culturing cells in a culture medium andexposing the cells to a stress condition as described herein. In oneembodiment, conditioned medium containing the one or more postcellularsignaling factors is collected from the cell culture after exposure tothe stress condition. The cells may be further cultured after exposureto the stress condition to allow for release of additional postcellularsignaling factors. In some embodiments, the cells are cultured for atleast 5, 10, 15, 20, 30, 45 or 60 minutes, or at least 2, 3, 4, 5, 6, 7,8, 9, 10, 11, 12, 24, 36, 48 or 72 hours after exposure to the stresscondition. In one embodiment, the composition comprises conditionedmedium from cells exposed to a stress condition. In one embodiment, theone or more postcellular signaling factors are isolated from the cellsexposed to the stress condition, such that the composition comprisingone or more postcellular signaling factors does not contain intactcells.

The composition comprising the one or more postcellular signalingfactors may be fractionated to isolate or concentrate one or morepostcellular signaling factors with immunostimulatory activity. Forexample, in one embodiment, the composition comprises a functionalfraction of the conditioned medium from the cells exposed to the stresscondition. In some embodiments, the functional fraction is prepared bytreating the conditioned medium with an enzyme (e.g. a protease) todegrade a particular class of compounds in the conditioned medium (e.g.proteins) and increase the relative abundance of other molecules (e.g.small molecules and nucleic acids). Suitable enzymes include, but arenot limited to, proteases and nucleases (e.g. RNases or DNases). In someembodiments, the functional fraction comprising the one or morepostcellular signaling factors is resistant to protease digestion ornuclease digestion (e.g. RNAse digestion or DNAse digestion). In someembodiments, the one or more postcellular signaling factors areresistant to protease digestion or nuclease digestion (e.g. RNAsedigestion or DNAse digestion).

Functional fractions of the conditioned medium may also be prepared byisolating molecules based on their molecular weight. For example, insome embodiments, postcellular signaling factors with a molecular weightof less than 50, 40, 30, 20, 10, 9, 8, 7, 6, 5, 4, 3, 2, 1 or 0.5 areisolated from the conditioned medium. In some embodiments, postcellularsignaling factors with a molecular weight of less than 50, 40, 30, 20,10, 9, 8, 7, 6, 5, 4, 3, 2, 1 or 0.5 kDa are isolated from theconditioned medium. Any of these values may be used to define a rangefor the size of the one or more postcellular signaling factors in thecomposition. For example, in some embodiments, the one or morepostcellular signaling factors in the composition have a molecularweight of less than 50, 40, 30, 20, 10, 9, 8, 7, 6, 5, 4, 3, 2, 1 or 0.5kDa. In some embodiments, the one or more postcellular signaling factorsin the composition have a molecular weight of greater than 50, 40, 30,20, 10, 9, 8, 7, 6, 5, 4, 3, 2, 1 or 0.5 kDa. In some embodiments, theone or more postcellular signaling factors in the composition have amolecular weight of between 0.5 and 50 kDa, between 0.5 and 25 kDa,between 25 and 50 kDa, between 10 and 20 kDa, between 20 and 30 kDa,between 30 and 40 kDa or between 40 and 50 kDa. Methods for isolatingcompounds of a particular molecular weight are known in the art. Forexample, in some embodiments, the conditioned medium is extracted withorganic solvent followed by HPLC fractionation. In other embodiments,the conditioned medium is subjected to size exclusion chromatography anddifferent fractions are collected. For example, conditioned medium maybe applied to a size exclusion column and fractionated on FPLC.

The functional fractions of the conditioned medium may be evaluated toidentify fractions with a particular activity, e.g. immunostimulatoryactivity. Any ofthe methods described herein for measuring immuneresponse may be used to identify functional fractions of the conditionedmedium with immunostimulatory activity. For example, fractions withimmunostimulatory activity may be identified by exposing an immune cell(e.g. a THP-1 human monocyte) to fractions of the conditioned medium andmeasuring the level or activity of NFκB, IRF or STING in, or producedby, the immune cell.

The fractions may also be evaluated to identify particular functionsassociated with immunostimulatory activity, e.g. activation of apurinergic receptor. For example, in some embodiments, the fractions maybe administered to the immune cell in combination with an inhibitor(e.g. a purinergic receptor inhibitor) to identify fractions whoseimmunostimulatory activity is attenuated by the inhibitor. Suitablepurinergic receptors include, but are not limited to, P2Y2, P2Y4 andP2Y6. In this way, it is possible to identify functional fractions witha particular activity, e.g. purinergic receptor activation. In oneembodiment, the functional fraction is inhibited by a purinergicreceptor inhibitor, e.g. a P2Y2 inhibitor. In one embodiment, the one ormore postcellular signaling factors comprises an agonist of a purinergicreceptor.

The skilled artisan will recognize that, in addition to the utility of afunctional fraction of the conditioned medium, the functional fractionmay be further analyzed to identify, for example, a single postcellularsignaling factor having immunostimulatory activity, and/or having aparticular activity, such as purinergic receptor activation. In someembodiments, the composition comprises only one postcellular signalingfactor isolated from a cell exposed to a stress condition, and which hasimmunostimulatory activity, and/or has a particular activity, such aspurinergic receptor activation. In some embodiments, the compositioncomprises 2, 3, 4, 5, 6, 7, 8, 9, or 10 postcellular signaling factorsisolated from a cell exposed to a stress condition, and which haveimmunostimulatory activity, and/or have a particular activity, such aspurinergic receptor activation.

III. Purinergic Receptor Agonists

Purinergic receptors, also known as purinoceptors, are a family ofplasma membrane molecules that are found in almost all mammaliantissues. Within the field of purinergic signalling, these receptors havebeen implicated in learning and memory, locomotor and feeding behavior,and sleep. More specifically, they are involved in several cellularfunctions, including proliferation and migration of neural stem cells,vascular reactivity, apoptosis and cytokine secretion. These functionshave not been well characterized and the effect of the extracellularmicroenvironment on their function is also poorly understood.

There are five known distinct classes of purinergic receptors, known asP1, P2X, P2Y, P2Z, P2U and P2T receptors, and they are so classifiedbased on their respective activation molecules. For instance, P1receptors such as A₁, A_(2A), A_(2B) and A₃ receptors, are Gprotein-coupled receptors activated by adenosine. P2Y receptors, such asP2Y2, P2Y4, P2Y6, P2Y11, P2Y12, P2Y13 and P2Y14, are also Gprotein-coupled receptors but are activated by nucleotides such as ATP,ADP, UTP, UDP and UDP-glucose. P2X receptors are ligand-gated ionchannels activated by ATP.

The term “purinergic receptor agonist” as used herein refers to anychemical entity, including but not limited to a small molecule, anucleoside, a nucleotide, a nucleobase, a sugar, a nucleotide-sugar, anN-acetylated nucleotide-sugar, a nucleic acid, an amino acid, apolysaccharide, a peptide, a polypeptide, a protein, an antibody, anaptamer (e.g., DNA/RNA/XNA/peptide aptamers) or a complex comprising anycombination of the aforementioned chemical entities, that activates apurinergic receptor.

A “P2Y receptor agonist” as used herein refers to any chemical entity,including but not limited to a small molecule, a nucleoside, anucleotide, a nucleobase, a sugar, a nucleotide-sugar, an N-acetylatednucleotide-sugar, a nucleic acid, an amino acid, a polysaccharide, apeptide, a polypeptide, a protein, an antibody, an aptamer (e.g.,DNA/RNA/XNA/peptide aptamers) or a complex comprising any combination ofthe aforementioned chemical entities, that activates a P2Y receptor(e.g., P2Y1, P2Y2, P2Y4, P2Y6, P2Y11 or P2Y12 receptor agonist).

P2Y receptors initiate an intracellular cascade of events that lead toan increase in the cytosolic concentration of calcium ions. Accordingly,in some embodiments, a P2Y receptor agonist may be identified bytreating a cell with a chemical entity and measuring intracellularcalcium ion concentrations. For example, commercially availablefluorescent dyes such as fluo-4 and fura-2 (Thermo Fisher Scientific,Waltham, Mass.) that fluoresce at greater intensity when bound to Ca²⁺may be used to measure intracellular Ca²⁺ concentrations. Cells such as1321N1 astrocytoma cells may be stably transfected with a P2Y receptorfor use in the assay. Fluorescence may be measured, for example, byusing a TriStar LB 942 plate reader (Berthold Technologies GmbH & Co.KG, Bad Wildbad, Germany). An increase in intracellular Ca²⁺concentrations in response to treatment with the chemical entity wouldindicate that the chemical entity is a P2Y receptor agonist.

In some embodiments, the P2Y receptor agonist activates Phospholipase-C(PLC) and/or Protein Kinase-C (PKC). Accordingly, in some embodiments, aP2Y receptor agonist may be identified by assaying for activation of PLCand/or PKC using assays commonly known in the art, for example asdescribed in Durban et al., 2007, European Journal of Lipid Science andTechnology 109(5): 469-473; and Glickman et al., 2004, Assay GuidanceManual, Editors Sittampalam et al., Eli Lilly & Company and the NationalCenter for Advancing Translational Sciences, Bethesda (Md.); the entirecontent of which is incorporated by reference herein in their entirety.An increase in PLC and/or PKC activation in response to treatment withthe chemical entity would indicate that the chemical entity is a P2Yreceptor agonist.

In some embodiments, the P2Y2 receptor agonist regulates chemotaxis ofmacrophages and immune cells. In some embodiments, the P2Y2 receptoragonist regulates neutrophil degranulation. In some embodiments, theP2Y2 receptor agonist regulates proliferation and migration of smoothmuscle cells. In some embodiments, the P2Y2 receptor agonist regulatessecretion of chloridion in epithelial cells. In some embodiments, theP2Y2 receptor agonist regulates secretion of water and mucin fromepithelial cells. Accordingly, in some embodiments, a P2Y2 receptoragonist may be identified by assaying for any one or more of chemotaxisof macrophages and immune cells, neutrophil degranulation, proliferationand migration of smooth muscle cells, secretion of chloridion inepithelial cells, and/or secretion of water and mucin from epithelialcells using utilizing assays commonly known in the art, for example asdescribed in Xu et al., 2018, Bioorganic and Medicinal Chemistry 26:366-374; and Linden et al., 2019, Annual Review of Immunology 37:325-47,Liu et al., 2012, Med Chem 20: 1155; Muller et al., 2017, Oncotarget 8:35962-72; the contents of each of which are incorporated by referenceherein in its entirety. A modulation of chemotaxis of macrophages andimmune cells, neutrophil degranulation, proliferation and migration ofsmooth muscle cells, secretion of chloridion in epithelial cells, and/orsecretion of water and mucin from epithelial cells in response totreatment with the chemical entity would indicate that the chemicalentity is a P2Y (e.g., P2Y2) receptor agonist.

In one embodiment, the purinergic receptor agonist (e.g., P2Y receptoragonist, such as P2Y2, P2Y4 or P2Y6 agonist) administered in combinationwith a STING agonist is a small molecule compound or a nucleotide asdefined herein. Non-limiting examples of small molecule andnucleotide-based purinergic receptor agonists are described inInternational Patent Application Nos. WO 2004/047749, WO 1998/034593, WO1991/016056, WO 2001/1045691, Jacobson et al. (Novartis Found. Symp.,2006, 276:58-281), and Sakuma et al. (Nature Scientific Reports, 2017,7:6050), each of which is incorporated herein by reference in itsentirety.

In one embodiment, the purinergic receptor agonist used in a method ofthe invention is a P2 receptor agonist. In one embodiment, thepurinergic receptor agonist is a P2Y receptor agonist (e.g., P2Y1, P2Y2,P2Y4, P2Y6, P2Y11 or P2Y12 receptor agonist). In one embodiment, thepurinergic receptor agonist is a P2Y2, P2Y4 or P2Y6 receptor agonist. Inone embodiment, the purinergic receptor agonist is a P2Y2 receptoragonist. In one embodiment, the purinergic receptor agonist is a P2Y4receptor agonist. In another embodiment, the purinergic receptor agonistis a P2Y6 receptor agonist. In one embodiment, the purinergic receptoragonist is a P2Y1 receptor agonist. In one embodiment, the purinergicreceptor agonist is a P2Y11 receptor agonist. In one embodiment, thepurinergic receptor agonist is a P2Y12 receptor agonist.

In one embodiment, the purinergic receptor agonist (e.g., P2Y receptoragonist, such as P2Y2, P2Y4 or P2Y6 agonist) is a nucleotide-basedcompound represented by the following structural formula:

or a pharmaceutically acceptable salt, free acid, an analogue, aregioisomer, a stereoisomer or a tautomer thereof wherein X¹, X² and X³,for each instance is independently selected from O, S, halogen, imido,methyl or methylene (as valency permits), ethyl or ethylene (as valencypermits), halomethyl or halomethylene (as valency permits), haloethyl orhaloethylene (as valency permits), wherein at least one instance of X¹,X² and X³ is O or S; A¹ and A² are each independently O or S; R isselected from O, S, methoxy, thiomethoxy, ethoxy, and thioethoxy; and Aris an optionally substituted monocyclic or bicyclic heteroaryl having atleast one nitrogen atom (e.g., 1, 2, 3 or 4) and optionally one or moreheteroatoms selected from O and S; and wherein n is 1, 2 or 3,preferably 2 or 3, preferably 3.

In one embodiment, the purinergic receptor agonist (e.g., P2Y receptoragonist, such as P2Y2, P2Y4 or P2Y6 agonist) is a nucleotide-basedcompound represented by the following structural formula:

or a pharmaceutically acceptable salt, free acid, an analogue, aregioisomer, a stereoisomer or a tautomer thereof wherein X¹ and X², foreach instance is independently selected from O, S, halogen, imido,methyl or methylene (as valency permits), ethyl or ethylene (as valencypermits), halomethyl or halomethylene (as valency permits), haloethyl orhaloethylene (as valency permits), wherein at least one instance of X¹and X² is O or S; A¹ and A² are each independently O or S; R is selectedfrom O, S, methoxy, thiomethoxy, ethoxy, and thioethoxy; and Ar¹ and Ar²are each and independently an optionally substituted monocyclic orbicyclic heteroaryl having at least one nitrogen atom (e.g., 1, 2, 3 or4) and optionally one or more heteroatoms selected from O and S; n is aninteger from 1 to 20.

In one embodiment, Ar, Ar¹ and Ar² in the two structural formulasdescribed above for nucleotide-based purinergic receptor are eachindependently selected from the group consisting of:

In one embodiment, the purinergic receptor agonist (e.g., P2Y receptoragonist, such as P2Y2, P2Y4 or P2Y6 agonist) is a compound selected fromthe following:

or a pharmaceutically acceptable salt, free acid, an analogue, aregioisomer, a stereoisomer or a tautomer thereof.

In one particular embodiment, the purinergic receptor agonist is a P2Y2,P2Y4 or P2Y6 receptor agonist and is a compound selected from thefollowing:

or a pharmaceutically acceptable salt, free acid, an analogue, aregioisomer, a stereoisomer or a tautomer thereof.

In one embodiment, the purinergic receptor agonist (e.g., P2Y receptoragonist, such as P2Y2, P2Y4 or P2Y6 agonist) is a compound representedby the following structural formula, or a pharmaceutically acceptablesalt, free acid, an analogue, a regioisomer, a stereoisomer or atautomer thereof.

In one embodiment, the purinergic receptor agonist (e.g., P2Y receptoragonist, such as P2Y2, P2Y4 or P2Y6 agonist) is selected from ATPdisodium salt ATPγS tetralithium salt, BzATP triethylammoniumsalt,α,β-Methyleneadenosine 5′-triphosphate trisodium salt,2-Methylthioadenosine diphosphate trisodium salt, 2-Methylthioadenosinetriphosphate tetrasodium salt, MRS 2693 trisodium salt, MRS 2768tetrasodium salt, MRS 2905,

MRS 2957 triethylammonium salt, MRS 4062 triethylammonium salt, NF 546,5-OMe-UDP trisodium salt, PSB 0474, 2-ThioUTP tetrasodium salt, andUTPγS trisodium salt.

In some embodiments, the purinergic receptor agonist (e.g., P2Y receptoragonist, such as P2Y2, P2Y4 or P2Y6 agonist) is selected from the groupconsisting of ATP, adenosine, cytidine, inosine, uridine, guanosine,AMP, CMP, IMP, GMP, cAMP, UMP, ADP, GDP, CDP, IDP, UDP, CTP, GTP, ITP,UTP and cGMP. In some embodiments, the purinergic receptor agonist(e.g., P2Y receptor agonist, such as P2Y2, P2Y4 or P2Y6 agonist) isselected from the group consisting of ATP, adenosine, AMP, UMP, ADP,GDP, IDP, UDP, CTP, GTP, ITP and UTP.

IV. STING Agonists

STING is an adaptor protein anchored in the ER. In its basal state,STING exists as a dimer, with its C-terminal domain residing in thecytosol; however, in the presence of cytosolic DNA (typically due toviral, bacterial, or parasitic infections) STING undergoesconformational changes and transits from the ER through the Golgi toperinuclear endosomes. Consequently, STING recruits TANK-binding kinase1 (TBK1), which phosphorylates STING, rendering it more accessible forthe binding of the transcription factor IFN-regulatory factor 3 (IRF3).TBK1 then phosphorylates IRF3, which translocates to the nucleus todrive transcription of interferon-β (IFN-β) and other innate immunegenes. Bacterial cyclic-dinucleotides (CDNs) are natural ligands ofSTING and link the presence of cytosolic DNA to the activation of STING.For example, bacteria and mammalian cells generate CDNs via the DNAsensor cyclic GMP-AMP synthase (cGAS/MB21D1), which catalyzes thesynthesis of cyclic GMP-AMP (cGAMP) from GTP and ATP upon DNA binding.Cells from cGAS-deficient mice were unable to produce type I IFNs inresponse to cytosolic DNA. Upon DNA exposure within the cytosol, cGAS isthe major receptor that directly binds DNA, leading to cGAMP production,which in turn engages STING to trigger the remaining signaling eventsthat drive IFN-β expression. STING pathway activation within antigenpresenting cells (APCs) in the tumor microenvironment leads toproduction of IFN-β and the spontaneous generation of antitumor CD8+ Tcell responses, allowing for control of the growth of severaltransplantable tumor cell models. See Corrales et al., 2016, J Clin.Invest. 126(7): 2404-2411.

The term “STING agonist” as used herein refers to any chemical entity,including but not limited to a small molecule, a nucleoside, anucleotide, a nucleobase, a sugar, a nucleic acid, an amino acid, apolysaccharide, a peptide, a polypeptide, a protein, an antibody, anaptamer (e.g., DNA/RNA/XNA/peptide aptamers) or a complex comprising anycombination of the aforementioned chemical entities, that activates theSTING pathway. In some embodiments, the STING agonist interacts directlywith the STING protein. In some embodiments, the STING agonist interactswith a component of the STING pathway, for example, GMP-AMP synthase,TBK1, IRF3 or IFN-β. In some embodiments, the STING agonist increasesthe level or activity of one or more components of the STING pathway,for example, STING, GMP-AMP synthase, TBK1, IRF3 and/or IFN-β. In aparticular embodiment, the STING agonist increases the level or activityof IRF3.

A chemical entity may be identified as a STING agonist, for example, bytreating a cell with the chemical entity and measuring IRF3 activity.For example, an IRF reporter cell such as T1T-Dual™ cells (InvivoGen)may used to identify STING agonists. THP1-Dual™ cells are human THP1monocytes that have been engineered to contain an inducible IRF reporterconstruct. IRF activity is measured in these cells by assessing theactivity of a secreted luciferase. An increase in IRF activity in cellstreated with the chemical entity would indicate that the compound is aSTING agonist.

A chemical entity may also be identified as a STING agonist by treatinga cell with the chemical entity and measuring IFN-β expression and/oractivity. For example, antigen presenting cells (APCs), PBMCs, dendriticcells or the TTHP1-Dual™ cells described above may be treated with thechemical entity and IFN-β expression measured by methods known in theart, such as ELISA. An IFN-β reporter cell line such as B16-Blue IFNreporter cells (InvivoGen) may also be used to measure IFN-β expressionin response to treatment with the chemical entity. For the reporter cellline, IFN-β expression may be measured by adding the substrateQUANTI-Blue (InvivoGen) and measuring color intensity using aspectrophotometer at 620-655 nm. See Woo et al., 2014, Immunity 41(5):830-842, which is incorporated by reference herein in its entirety. Anincrease in IFN-β expression and/or activity in the cells treated withthe chemical entity would indicate that the compound is a STING agonist.

Another method for identifying a chemical entity as a STING agonist isthrough a HepAD38-derived reporter cell line that expresses fireflyluciferase in response to the activation of the cyclic GMP-AMP synthase(cGAS)-STING pathway. The reporter cells are treated with the chemicalentity and the luciferase signal produced by the cells is measuredseveral hours after treatment. See Liu et al., 2017, Antiviral Research147: 37-46, which is incorporated by reference herein in its entirety.An increase in luciferase activity in the reporter cells treated withthe chemical entity would indicate that the compound is a STING agonist.

In one embodiment, the STING agonist is a small molecule compound asdefined herein. Examples of small molecule STING agonists are describedin U.S. Pat. Nos. 9,724,408; 10,011,630; 10,045,961; and 10,106,574;International Patent Application Publication Nos. WO2014/189805, WO2013/185052, WO 2017/075477, WO 2018/198076, WO 2014/093936, WO2018/009466, WO 2016/145102, WO 2016/096577, WO2017/027645, WO2017/027646, WO 2018/100558, WO 2018/098203, WO 2018/067423, WO2018/118665, WO2018/118664, WO 2018/234808, WO 2018/234807, WO2018/234805, WO2019/069275, WO2019/051489, WO2019/046511, WO2019/027858,WO 2019/027857, WO 2018/208667, WO 2017/100305 and WO 2018/200812 (STINGagonists can be conjugated to antibodies), WO 2018/172206, WO2018/138685, WO 2018/138684, WO 2018/045204, WO 2017/180769, Ramanjuluet al., 2018, Nature 564(7736):439-443, and Corrales et al., 2016, JClin. Invest. 126(7): 2404-2411, each of which is incorporated byreference herein in its entirety.

In some embodiments, the STING agonist is a cyclic dinucleotide (CDN).Suitable cyclic dinucleotides include, but are not limited to, cGAMP,2′3′-cGAMP, 3′3′-cGAMP, 3′3′-cGAMP-F, c-di-GMP, c-di-GMP-F, Rp/Sp,MK-1454, ADU-S100 (also known as ML-RR-S2 CDA or MIW815), and Disodiumdithio-(RP, RP)-[cyclic[A(2′,5′)pA(3′,5′)p]][Rp,Rp]-Cyclic(adenosine-(2′,5′)monophosphorothioateadenosine-(3′,5′)-monophosphorothioate) (also knownas disodium ADU-S100) the structures of some of which are shown below:

In one embodiment, the SUNG agonist is a CDN compound represented by thefollowing structural formula:

or a pharmaceutically acceptable salt, a free acid, a regioisomer, astereoisomer or a tautomer thereof wherein Ar, for each instance, isindependently optionally substituted monocyclic or bicyclic heteroarylhaving at least one nitrogen atom (e.g., 1, 2, 3 or 4) and optionallyone or more heteroatoms selected from O and S; wherein R, for eachinstance, is independently hydrogen or an optionally substituted C₁-C₄alkyl; wherein each oxygen atom in the two phosphate groups and the ORgroups is optionally and independently substituted with S; wherein eachOR group and each O⁻ is optionally substituted with a halogen (e.g., F,Cl). In one embodiment, each Ar is independently selected from the groupconsisting of

ADU-S100 (ML RR-S2 CDA) is a rationally designed synthetic CDN STINGagonist and exhibits enhanced stability, human STING activation,cellular uptake, and antitumor efficacy, as well as low reactogenicitycompared with the natural STING ligands produced by bacteria or hostcell cGAS. See Corrales et al., 2015, Cell Reports 11(7): 1018-1030. Toincrease affinity for human STING, ADU-S100 (ML RR-S2 CDA) contains anoncanonical structure defined by a phosphate bridge with one 2′-5′ andone 3′-5′ mixed phosphodiester linkages (2′,3′ CDNs). The 2′,3′ mixedlinkage structure confers increased STING binding affinity and is alsofound in endogenous cGAMP produced by eukaryotic cGAS. ADU-S100 (MLRR-S2 CDA) was shown to broadly activate all known human STING allelesin a HEK293T cellular STING signaling assay and induced dose-dependentexpression of IFN-β in human peripheral blood monocytes (PBMCs) isolatedfrom multiple donors with different STING genotypes. ADU-S100 (ML RR-S2CDA) was evaluated in multiple syngeneic mouse tumor models, includingB16.F10 melanoma, 4T1 mammary carcinoma, and CT26 colon carcinoma, anddemonstrated a potent antitumor immune response and significant tumorregression in each model. ADU-S100 activates all known human and mouseSTINGs, and effectively induces the expression of cytokines andchemokines, leading to a robust and durable antigen-specific T-cellmediated immune response against cancer cells. See Corrales et al.,2015, Cell Reports 11(7): 1018-1030.

In some embodiments, the STING agonist is a flavonoid. Suitableflavonoids include, but are not limited to,10-(carboxymethyl)-9(10H)acridone (CMA), 5,6-Dimethylxanthenone-4-aceticacid (DMXAA) or vadimezan, methoxyvone, 6, 4′-dimethoxyflavone,4′-methoxyflavone, 3′, 6′-dihydroxyflavone, 7, 2′-dihydroxyflavone,daidzein, formononetin, retusin 7-methyl ether, xanthone, or anycombination thereof. In certain embodiments, the STING agonist is notDMXAA.

In some embodiments, the STING agonist is a flavonoid and comprises oneof the following basic ring structures, where further substitutions onany position of any ring, further ring fusions, and alternativestereochemistry are permissible:

In some embodiments the STING agonist is an amidobenzimidazole compoundor a dimeric amidobenzimidazole compound. Amidobenzimidazole-basedcompounds exhibit enhanced binding to STING and strong anti-tumouractivity. See Ramanjulu et al., 2018, Nature 564(7736):439-443, which isincorporated by reference herein in its entirety.

In one embodiment, the STING agonist is a dimeric compound representedby the following structural formula:

or a pharmaceutically acceptable salt, a free acid, a regioisomer, astereoisomer or a tautomer thereof wherein one or two of X¹, X² and X³is/are nitrogen while the other(s) is/are carbon; wherein one or two ofX⁴, X⁵ and X⁶ is/are nitrogen while the other(s) is/are carbon; whereinR is an optionally substituted C₁-C₆ alkyl, C₂-C₆ alkenyl or C₂-C₆alkynyl covalently linked to ring A¹ and ring A²; each of rings A¹, A²,B¹ and B² is optionally substituted. In one embodiment, each of rings B¹and B² is substituted with an amid o group or an alkyl substituted withan amido group. In one embodiment, the STING agonist is a dimericamidobenzimidazole compound represented by one of the followingformulas:

or a pharmaceutically acceptable salt, a free acid, a regioisomer, astereoisomer or a tautomer thereof.

In some embodiments, the STING agonist is DNA. Suitable types of DNAinclude, but are not limited to, viral DNA, bacterial DNA, anddouble-stranded DNA. Because DNA binding to GMP-AMP synthase catalyzesthe synthesis of cGAMP, which in turn engages STING to trigger theremaining signaling events that drive IFN-β expression, DNA may be usedas a STING agonist to induce production of cGAMP and activation of theSTING pathway.

In some embodiments, the STING agonist increases the level or activityof a type I interferon (IFN), e.g. IFN-β or interferon-α (IFN-α).Activation of the transcription factor IRF3 in the STING pathway leadsto increased expression of type I IFNs. Type I IFNs can act at severallevels within the generation of an adaptive T cell response, promotingcross-priming of antigens by APCs and their migration to lymph nodes,thereby enhancing the effector functions of cytotoxic T-lymphocytes(CTLs) and supporting the survival of memory CTLs. See Zitvogel et al.,2015, Nat. Rev. Immunol. 15(7): 405-414.

V. Methods of Increasing Immune Activity

In certain aspects, the postcellular signaling factors described hereinmay be used to increase immune activity in a cell, tissue or in asubject, for example, a subject who would benefit from increased immuneactivity. In some aspects, the disclosure relates to a method ofincreasing immune activity in a target cell, the method comprisingcontacting the target cell with a composition comprising one or morepostcellular signaling factors produced by cells exposed to a stresscondition, wherein the composition is administered in an amountsufficient to increase the immune activity relative to a cell that isnot treated with the composition.

In some aspects, the disclosure relates to a method of increasing immuneactivity in a target tissue, the method comprising administering to thetarget tissue a composition comprising one or more postcellularsignaling factors produced by cells exposed to a stress condition,wherein the composition is administered in an amount sufficient toincrease the immune activity relative to a tissue that is not treatedwith the composition.

In some aspects, the disclosure relates to a method of increasing immuneactivity in a subject, the method comprising administering to thesubject a composition comprising one or more postcellular signalingfactors produced by cells exposed to a stress condition, wherein thecomposition is administered in an amount sufficient to increase theimmune activity relative to a subject that is not treated with thecomposition. In one embodiment, the subject is in need of an increasedimmune activity.

The combinations of a STING agonist and a purinergic receptor agonistdescribed herein may be used to increase immune activity in a cell,tissue or in a subject, for example, a subject who would benefit fromincreased immune activity. In some aspects, the disclosure relates to amethod of increasing immune activity in a target cell, the methodcomprising contacting the target cell with a combination of a STINGagonist and a purinergic receptor agonist, wherein the STING agonist andthe purinergic receptor agonist are administered in an amount sufficientto increase the immune activity relative to a cell that is not treatedwith the STING agonist and/or the purinergic receptor agonist.

In some aspects, the disclosure relates to a method of increasing immuneactivity in a cell, the method comprising administering to the cell, incombination, a STING agonist and a purinergic receptor agonist (e.g.,P2Y receptor agonist, such as P2Y2, P2Y4 or P2Y6 agonist), wherein theSTING agonist and purinergic receptor agonist are administered in anamount sufficient to increase the immune activity relative to a cellthat is not treated with the STING agonist and/or the purinergicreceptor agonist.

In some aspects, the disclosure relates to a method of increasing immuneactivity in a target tissue, the method comprising administering to thetarget tissue, in combination, a STING agonist and a purinergic receptoragonist (e.g., P2Y receptor agonist, such as P2Y2, P2Y4 or P2Y6agonist), wherein the STING agonist and purinergic receptor agonist areadministered in an amount sufficient to increase the immune activityrelative to a tissue that is not treated with the STING agonist and/orthe purinergic receptor agonist.

In some aspects, the disclosure relates to a method of increasing immuneactivity in a subject, the method comprising administering to thesubject, in combination, a STING agonist and a purinergic receptoragonist (e.g., P2Y receptor agonist, such as P2Y2, P2Y4 or P2Y6agonist), wherein the STING agonist and the purinergic receptor agonistare administered in an amount sufficient to increase the immune activityrelative to a subject that is not treated with the STING agonist and/orthe purinergic receptor agonist. In one embodiment, the subject is inneed of an increased immune activity.

According to some methods of the disclosure, immune activity may beregulated by interaction of the postcellular signaling factors with abroad range of immune cells, including, for example, any one or more ofmast cells, Natural Killer (NK) cells, basophils, neutrophils,monocytes, macrophages, dendritic cells, eosinophils, lymphocytes (e.g.B-lymphocytes (B-cells)), and T-lymphocytes (T-cells)).

According to some methods of the disclosure, immune activity may beregulated by interaction of the STING agonist and the purinergicreceptor agonist with a broad range of immune cells, including, forexample, any one or more of mast cells, Natural Killer (NK) cells,basophils, neutrophils, monocytes, macrophages, dendritic cells,eosinophils, lymphocytes (e.g. B-lymphocytes (B-cells)), andT-lymphocytes (T-cells)).

Types of Immune Cells

Mast cells are a type of granulocyte containing granules rich inhistamine and heparin, an anti-coagulant. When activated, a mast cellreleases inflammatory compounds from the granules into the localmicroenvironment. Mast cells play a role in allergy, anaphylaxis, woundhealing, angiogenesis, immune tolerance, defense against pathogens, andblood-brain barrier function.

Natural Killer (NK) cells are cytotoxic lymphocytes that lyse certaintumor and virus infected cells without any prior stimulation orimmunization. NK cells are also potent producers of various cytokines,e.g. IFN-gamma (IFNγ), TNF-alpha (TNFα), GM-CSF and IL-3. Therefore, NKcells are also believed to function as regulatory cells in the immunesystem, influencing other cells and responses. In humans, NK cells arebroadly defined as CD56+CD3− lymphocytes. The cytotoxic activity of NKcells is tightly controlled by a balance between the activating andinhibitory signals from receptors on the cell surface. A main group ofreceptors that inhibits NK cell activation are the inhibitory killerimmunoglobulin-like receptors (KIRs). Upon recognition of self MHC classI molecules on the target cells, these receptors deliver an inhibitorysignal that stops the activating signaling cascade, keeping cells withnormal MHC class I expression from NK cell lysis. Activating receptorsinclude the natural cytotoxicity receptors (NCR) and NKG2D that push thebalance towards cytolytic action through engagement with differentligands on the target cell surface. Thus, NK cell recognition of targetcells is tightly regulated by processes involving the integration ofsignals delivered from multiple activating and inhibitory receptors.

Monocytes are bone marrow-derived mononuclear phagocyte cells thatcirculate in the blood for few hours/days before being recruited intotissues. See Wacleche et al., 2018, Viruses (10)2: 65. The expression ofvarious chemokine receptors and cell adhesion molecules at their surfaceallows them to exit the bone marrow into the blood and to besubsequently recruited from the blood into tissues. Monocytes belong tothe innate arm of the immune system providing responses against viral,bacterial, fungal or parasitic infections. Their functions include thekilling of pathogens via phagocytosis, the production of reactive oxygenspecies (ROS), nitric oxide (NO), myeloperoxidase and inflammatorycytokines. Under specific conditions, monocytes can stimulate or inhibitT-cell responses during cancer as well as infectious and autoimmunediseases. They are also involved in tissue repair andneovascularization.

Macrophages engulf and digest substances such as cellular debris,foreign substances, microbes and cancer cells in a process calledphagocytosis. Besides phagocytosis, macrophages play a critical role innonspecific defense (innate immunity) and also help initiate specificdefense mechanisms (adaptive immunity) by recruiting other immune cellssuch as lymphocytes. For example, macrophages are important as antigenpresenters to T cells. Beyond increasing inflammation and stimulatingthe immune system, macrophages also play an important anti-inflammatoryrole and can decrease immune reactions through the release of cytokines.Macrophages that encourage inflammation are called M1 macrophages,whereas those that decrease inflammation and encourage tissue repair arecalled M2 macrophages.

Dendritic cells (DCs) play a critical role in stimulating immuneresponses against pathogens and maintaining immune homeostasis toharmless antigens. DCs represent a heterogeneous group of specializedantigen-sensing and antigen-presenting cells (APCs) that are essentialfor the induction and regulation of immune responses. In the peripheralblood, human DCs are characterized as cells lacking the T-cell (CD3,CD4, CD8), the B-cell (CD19, CD20) and the monocyte markers (CD14, CD16)but highly expressing HLA-DR and other DC lineage markers (e.g., CD1a,CD1c). See Murphy et al., Janeway's Immunobiology. 8th ed. GarlandScience; New York, N.Y., USA: 2012. 868p.

The term “lymphocyte” refers to a small white blood cell formed inlymphatic tissue throughout the body and in normal adults making upabout 22-28% of the total number of leukocytes in the circulating bloodthat plays a large role in defending the body against disease.Individual lymphocytes are specialized in that they are committed torespond to a limited set of structurally related antigens throughrecombination of their genetic material (e.g. to create a T cellreceptor and a B cell receptor). This commitment, which exists beforethe first contact of the immune system with a given antigen, isexpressed by the presence of receptors specific for determinants(epitopes) on the antigen on the lymphocyte's surface membrane. Eachlymphocyte possesses a unique population of receptors, all of which haveidentical combining sites. One set, or clone, of lymphocytes differsfrom another clone in the structure of the combining region of itsreceptors and thus differs in the epitopes that it can recognize.Lymphocytes differ from each other not only in the specificity of theirreceptors, but also in their functions. (Paul, W. E., “Chapter 1: Theimmune system: an introduction,” Fundamental Immunology, 4th Edition,Ed. Paul, W. E., Lippicott-Raven Publishers, Philadelphia, (1999), at p.102).

Lymphocytes include B-lymphocytes (B-cells), which are precursors ofantibody-secreting cells, and T-lymphocytes (T-cells).

B-Lymphocytes (B-cells)

B-lymphocytes are derived from hematopoietic cells of the bone marrow. Amature B-cell can be activated with an antigen that expresses epitopesthat are recognized by its cell surface. The activation process may bedirect, dependent on cross-linkage of membrane Ig molecules by theantigen (cross-linkage-dependent B-cell activation), or indirect, viainteraction with a helper T-cell, in a process referred to as cognatehelp. In many physiological situations, receptor cross-linkage stimuliand cognate help synergize to yield more vigorous B-cell responses(Paul, W. E., “Chapter 1: The immune system: an introduction,”Fundamental Immunology, 4th Edition, Ed. Paul, W. E., Lippicott-RavenPublishers, Philadelphia, (1999)).

Cross-linkage dependent B-cell activation requires that the antigenexpress multiple copies of the epitope complementary to the binding siteof the cell surface receptors, because each B-cell expresses Igmolecules with identical variable regions. Such a requirement isfulfilled by other antigens with repetitive epitopes, such as capsularpolysaccharides of microorganisms or viral envelope proteins.Cross-linkage-dependent B-cell activation is a major protective immuneresponse mounted against these microbes (Paul, W. E., “Chapter 1: Theimmune system: an introduction”, Fundamental Immunology, 4th Edition,Ed. Paul, W. E., Lippicott-Raven Publishers, Philadelphia, (1999)).

Cognate help allows B-cells to mount responses against antigens thatcannot cross-link receptors and, at the same time, providescostimulatory signals that rescue B cells from inactivation when theyare stimulated by weak cross-linkage events. Cognate help is dependenton the binding of antigen by the B-cell's membrane immunoglobulin (Ig),the endocytosis of the antigen, and its fragmentation into peptideswithin the endosomal/lysosomal compartment of the cell. Some of theresultant peptides are loaded into a groove in a specialized set of cellsurface proteins known as class II major histocompatibility complex(NMC) molecules. The resultant class II/peptide complexes are expressedon the cell surface and act as ligands for the antigen-specificreceptors of a set of T-cells designated as CD4⁺ T-cells. The CD4⁺T-cells bear receptors on their surface specific for the B-cell's classII/peptide complex. B-cell activation depends not only on the binding ofthe T cell through its T cell receptor (TCR), but this interaction alsoallows an activation ligand on the T-cell (CD40 ligand) to bind to itsreceptor on the B-cell (CD40) signaling B-cell activation. In addition,T helper cells secrete several cytokines that regulate the growth anddifferentiation of the stimulated B-cell by binding to cytokinereceptors on the B cell (Paul, W. E., “Chapter 1: The immune system: anintroduction,” Fundamental Immunology, 4th Edition, Ed. Paul, W. E.,Lippicott-Raven Publishers, Philadelphia, (1999)).

During cognate help for antibody production, the CD40 ligand istransiently expressed on activated CD4⁺ T helper cells, and it binds toCD40 on the antigen-specific B cells, thereby transducing a secondcostimulatory signal. The latter signal is essential for B cell growthand differentiation and for the generation of memory B cells bypreventing apoptosis of germinal center B cells that have encounteredantigen. Hyperexpression of the CD40 ligand in both B and T cells isimplicated in pathogenic autoantibody production in human SLE patients(Desai-Mehta, A. et al., “Hyperexpression of CD40 ligand by B and Tcells in human lupus and its role in pathogenic autoantibodyproduction,” J. Clin. Invest. Vol. 97(9), 2063-2073, (1996)).

T-Lymphocytes (T-cells)

T-lymphocytes derived from precursors in hematopoietic tissue, undergodifferentiation in the thymus, and are then seeded to peripherallymphoid tissue and to the recirculating pool of lymphocytes.T-lymphocytes or T cells mediate a wide range of immunologic functions.These include the capacity to help B cells develop intoantibody-producing cells, the capacity to increase the microbicidalaction of monocytes/macrophages, the inhibition of certain types ofimmune responses, direct killing of target cells, and mobilization ofthe inflammatory response. These effects depend on T cell expression ofspecific cell surface molecules and the secretion of cytokines (Paul, W.E., “Chapter 1: The immune system: an introduction”, FundamentalImmunology, 4th Edition, Ed. Paul, W. E., Lippicott-Raven Publishers,Philadelphia, (1999)).

T cells differ from B cells in their mechanism of antigen recognition.Immunoglobulin, the B cell's receptor, binds to individual epitopes onsoluble molecules or on particulate surfaces. B-cell receptors seeepitopes expressed on the surface of native molecules. While antibodyand B-cell receptors evolved to bind to and to protect againstmicroorganisms in extracellular fluids, T cells recognize antigens onthe surface of other cells and mediate their functions by interactingwith, and altering the behavior of these antigen-presenting cells(APCs). There are three main types of APCs in peripheral lymphoid organsthat can activate T cells: dendritic cells, macrophages and B cells. Themost potent of these are the dendritic cells, whose only function is topresent foreign antigens to T cells. Immature dendritic cells arelocated in tissues throughout the body, including the skin, gut, andrespiratory tract. When they encounter invading microbes at these sites,they endocytose the pathogens and their products, and carry them via thelymph to local lymph nodes or gut associated lymphoid organs. Theencounter with a pathogen induces the dendritic cell to mature from anantigen-capturing cell to an APC that can activate T cells. APCs displaythree types of protein molecules on their surface that have a role inactivating a T cell to become an effector cell: (1) MHC proteins, whichpresent foreign antigen to the T cell receptor; (2) costimulatoryproteins which bind to complementary receptors on the T cell surface;and (3) cell-cell adhesion molecules, which enable a T cell to bind tothe APC for long enough to become activated (“Chapter 24: The adaptiveimmune system,” Molecular Biology of the Cell, Alberts, B. et al.,Garland Science, NY, (2002)).

T-cells are subdivided into two distinct classes based on the cellsurface receptors they express. The majority of T cells express T cellreceptors (TCR) consisting of α and β-chains. A small group of T cellsexpress receptors made of γ and δ chains. Among the α/β T cells are twosub-lineages: those that express the coreceptor molecule CD4 (CD4⁺ Tcells); and those that express CD8 (CD8⁺ T cells). These cells differ inhow they recognize antigen and in their effector and regulatoryfunctions.

CD4⁺ T cells are the major regulatory cells of the immune system. Theirregulatory function depends both on the expression of their cell-surfacemolecules, such as CD40 ligand whose expression is induced when the Tcells are activated, and the wide array of cytokines they secrete whenactivated.

T cells also mediate important effector functions, some of which aredetermined by the patterns of cytokines they secrete. The cytokines canbe directly toxic to target cells and can mobilize potent inflammatorymechanisms.

In addition, T cells, particularly CD8⁺ T cells, can develop intocytotoxic T-lymphocytes (CTLs) capable of efficiently lysing targetcells that express antigens recognized by the CTLs (Paul, W. E.,“Chapter 1: The immune system: an introduction,” Fundamental Immunology,4th Edition, Ed. Paul, W. E., Lippicott-Raven Publishers, Philadelphia,(1999)).

T cell receptors (TCRs) recognize a complex consisting of a peptidederived by proteolysis of the antigen bound to a specialized groove of aclass II or class I MHC protein. CD4⁺ T cells recognize onlypeptide/class II complexes while CD8⁺ T cells recognize peptide/class Icomplexes (Paul, W. E., “Chapter 1: The immune system: an introduction,”Fundamental Immunology, 4th Edition, Ed. Paul, W. E., Lippicott-RavenPublishers, Philadelphia, (1999)).

The TCR's ligand (i.e., the peptide/MHC protein complex) is createdwithin APCs.

In general, class II MIC molecules bind peptides derived from proteinsthat have been taken up by the APC through an endocytic process. Thesepeptide-loaded class II molecules are then expressed on the surface ofthe cell, where they are available to be bound by CD4⁺ T cells with TCRscapable of recognizing the expressed cell surface complex. Thus, CD4⁺ Tcells are specialized to react with antigens derived from extracellularsources (Paul, W. E., “Chapter 1: The immune system: an introduction,”Fundamental Immunology, 4th Edition, Ed. Paul, W. E., Lippicott-RavenPublishers, Philadelphia, (1999)).

In contrast, class I MHC molecules are mainly loaded with peptidesderived from internally synthesized proteins, such as viral proteins.These peptides are produced from cytosolic proteins by proteolysis bythe proteosome and are translocated into the rough endoplasmicreticulum. Such peptides, generally composed of nine amino acids inlength, are bound into the class I MHC molecules and are brought to thecell surface, where they can be recognized by CD8⁺ T cells expressingappropriate receptors. This gives the T cell system, particularly CD8⁺ Tcells, the ability to detect cells expressing proteins that aredifferent from, or produced in much larger amounts than, those of cellsof the remainder of the organism (e.g., viral antigens) or mutantantigens (such as active oncogene products), even if these proteins intheir intact form are neither expressed on the cell surface nor secreted(Paul, W. E., “Chapter 1: The immune system: an introduction,”Fundamental Immunology, 4th Edition, Ed. Paul, W. E., Lippicott-RavenPublishers, Philadelphia, (1999)).

T cells can also be classified based on their function as helper Tcells; T cells involved in inducing cellular immunity; suppressor Tcells; and cytotoxic T cells.

Helper T Cells Helper T cells are T cells that stimulate B cells to makeantibody responses to proteins and other T cell-dependent antigens. Tcell-dependent antigens are immunogens in which individual epitopesappear only once or a limited number of times such that they are unableto cross-link the membrane immunoglobulin (Ig) of B cells or do soinefficiently. B cells bind the antigen through their membrane Ig, andthe complex undergoes endocytosis. Within the endosomal and lysosomalcompartments, the antigen is fragmented into peptides by proteolyticenzymes, and one or more of the generated peptides are loaded into classII MHC molecules, which traffic through this vesicular compartment. Theresulting peptide/class II MHC complex is then exported to the B-cellsurface membrane. T cells with receptors specific for the peptide/classII molecular complex recognize this complex on the B-cell surface.(Paul, W. E., “Chapter 1: The immune system: an introduction,”Fundamental Immunology, 4th Edition, Ed. Paul, W. E., Lippicott-RavenPublishers, Philadelphia (1999)).

B-cell activation depends both on the binding of the T cell through itsTCR and on the interaction of the T-cell CD40 ligand (CD40L) with CD40on the B cell. T cells do not constitutively express CD40L. Rather,CD40L expression is induced as a result of an interaction with an APCthat expresses both a cognate antigen recognized by the TCR of the Tcell and CD80 or CD86. CD80/CD86 is generally expressed by activated,but not resting, B cells so that the helper interaction involving anactivated B cell and a T cell can lead to efficient antibody production.In many cases, however, the initial induction of CD40L on T cells isdependent on their recognition of antigen on the surface of APCs thatconstitutively express CD80/86, such as dendritic cells. Such activatedhelper T cells can then efficiently interact with and help B cells.Cross-linkage of membrane Ig on the B cell, even if inefficient, maysynergize with the CD40L/CD40 interaction to yield vigorous B-cellactivation. The subsequent events in the B-cell response, includingproliferation, Ig secretion, and class switching of the Ig class beingexpressed, either depend or are enhanced by the actions of Tcell-derived cytokines (Paul, W. E., “Chapter 1: The immune system: anintroduction,” Fundamental Immunology, 4th Edition, Ed. Paul, W. E.,Lippicott-Raven Publishers, Philadelphia, (1999)).

CD4⁺ T cells tend to differentiate into cells that principally secretethe cytokines IL-4, IL-5, IL-6, and IL-10 (T_(H)2 cells) or into cellsthat mainly produce IL-2, IFN-γ, and lymphotoxin (T_(H)1 cells). TheT_(H)2 cells are very effective in helping B-cells develop intoantibody-producing cells, whereas the T_(H)1 cells are effectiveinducers of cellular immune responses, involving enhancement ofmicrobicidal activity of monocytes and macrophages, and consequentincreased efficiency in lysing microorganisms in intracellular vesicularcompartments. Although CD4⁺ T cells with the phenotype of T_(H)2 cells(i.e., IL-4, IL-5, IL-6 and TL-10) are efficient helper cells, T_(H)1cells also have the capacity to be helpers (Paul, W. E., “Chapter 1: Theimmune system: an introduction,” Fundamental Immunology, 4th Edition,Ed. Paul, W. E., Lippicott-Raven Publishers, Philadelphia, (1999)).

T Cell Involvement in Cellular Immunity Induction

T cells also may act to enhance the capacity of monocytes andmacrophages to destroy intracellular microorganisms. In particular,interferon-gamma (IFN-γ) produced by helper T cells enhances severalmechanisms through which mononuclear phagocytes destroy intracellularbacteria and parasitism including the generation of nitric oxide andinduction of tumor necrosis factor (TNF) production. T_(H1) cells areeffective in enhancing the microbicidal action, because they produceIFN-γ. In contrast, two of the major cytokines produced by T_(H2) cells,IL-4 and IL-10, block these activities (Paul, W. E., “Chapter 1: Theimmune system: an introduction,” Fundamental Immunology, 4th Edition,Ed. Paul, W. E., Lippicott-Raven Publishers, Philadelphia, (1999)).

Regulatory T (Treg) Cells

Immune homeostasis is maintained by a controlled balance betweeninitiation and downregulation of the immune response. The mechanisms ofboth apoptosis and T cell anergy (a tolerance mechanism in which the Tcells are intrinsically functionally inactivated following an antigenencounter (Schwartz, R. H., “T cell anergy”, Annu. Rev. Immunol., Vol.21: 305-334 (2003)) contribute to the downregulation of the immuneresponse. A third mechanism is provided by active suppression ofactivated T cells by suppressor or regulatory CD4⁺ T (Treg) cells(Reviewed in Kronenberg, M. et al., “Regulation of immunity byself-reactive T cells”, Nature, Vol. 435: 598-604 (2005)). CD4⁺ Tregsthat constitutively express the IL-2 receptor alpha (IL-2Rα) chain (CD4⁺CD25⁺) are a naturally occurring T cell subset that are anergic andsuppressive (Taams, L. S. et al., “Human anergic/suppressive CD4⁺CD25⁺ Tcells: a highly differentiated and apoptosis-prone population”, Eur. J.Immunol. Vol. 31: 1122-1131 (2001)). Human CD4⁺CD25⁺ Tregs, similar totheir murine counterpart, are generated in the thymus and arecharacterized by the ability to suppress proliferation of responder Tcells through a cell-cell contact-dependent mechanism, the inability toproduce IL-2, and the anergic phenotype in vitro. Human CD4⁺CD25⁺ Tcells can be split into suppressive (CD25^(high)) and nonsuppressive(CD251^(low)) cells, according to the level of CD25 expression. A memberof the forkhead family of transcription factors, FOXP3, has been shownto be expressed in murine and human CD4⁺CD25⁺ Tregs and appears to be amaster gene controlling CD4⁺CD25⁺ Treg development (Battaglia, M. etal., “Rapamycin promotes expansion of functional CD4⁺CD25⁺Foxp3⁺regulator T cells of both healthy subjects and type 1 diabeticpatients”, J. Immunol., Vol. 177: 8338-8347, (2006)). Accordingly, insome embodiments, an increase in immune response may be associated witha lack of activation or proliferation of regulatory T cells.

Cytotoxic T Lymphocytes

CD8⁺ T cells that recognize peptides from proteins produced within thetarget cell have cytotoxic properties in that they lead to lysis of thetarget cells. The mechanism of CTL-induced lysis involves the productionby the CTL of perforin, a molecule that can insert into the membrane oftarget cells and promote the lysis of that cell. Perforin-mediated lysisis enhanced by granzymes, a series of enzymes produced by activatedCTLs. Many active CTLs also express large amounts of fas ligand on theirsurface. The interaction of fas ligand on the surface of CTL with fas onthe surface of the target cell initiates apoptosis in the target cell,leading to the death of these cells. CTL-mediated lysis appears to be amajor mechanism for the destruction of virally infected cells.

Lymphocyte Activation

The term “activation” or “lymphocyte activation” refers to stimulationof lymphocytes by specific antigens, nonspecific mitogens, or allogeneiccells resulting in synthesis of RNA, protein and DNA and production oflymphokines; it is followed by proliferation and differentiation ofvarious effector and memory cells. T-cell activation is dependent on theinteraction of the TCR/CD3 complex with its cognate ligand, a peptidebound in the groove of a class I or class II MHC molecule. The molecularevents set in motion by receptor engagement are complex. Among theearliest steps appears to be the activation of tyrosine kinases leadingto the tyrosine phosphorylation of a set of substrates that controlseveral signaling pathways. These include a set of adapter proteins thatlink the TCR to the ras pathway, phospholipase Cγ1, the tyrosinephosphorylation of which increases its catalytic activity and engagesthe inositol phospholipid metabolic pathway, leading to elevation ofintracellular free calcium concentration and activation of proteinkinase C, and a series of other enzymes that control cellular growth anddifferentiation. Full responsiveness of a T cell requires, in additionto receptor engagement, an accessory cell-delivered costimulatoryactivity, e.g., engagement of CD28 on the T cell by CD80 and/or CD86 onthe APC.

T-Memory Cells

Following the recognition and eradication of pathogens through adaptiveimmune responses, the vast majority (90-95%) of T cells undergoapoptosis with the remaining cells forming a pool of memory T cells,designated central memory T cells (TCM), effector memory T cells (TEM),and resident memory T cells (TRM) (Clark, R. A., “Resident memory Tcells in human health and disease”, Sci. Transl. Med., 7, 269rv1,(2015)).

Compared to standard T cells, these memory T cells are long-lived withdistinct phenotypes such as expression of specific surface markers,rapid production of different cytokine profiles, capability of directeffector cell function, and unique homing distribution patterns. MemoryT cells exhibit quick reactions upon re-exposure to their respectiveantigens in order to eliminate the reinfection of the offender andthereby restore balance of the immune system rapidly. Increasingevidence substantiates that autoimmune memory T cells hinder mostattempts to treat or cure autoimmune diseases (Clark, R. A., “Residentmemory T cells in human health and disease”, Sci. Transl. Med., Vol. 7,269rv1, (2015)).

Increasing Immune Activity

In some embodiments, the postcellular signaling factors described hereinmay increase immune activity in a tissue or subject by increasing thelevel or activity of any one or more of the immune cells describedherein, for example, macrophages, monocytes, dendritic cells, and CD4+,CD8+ or CD3+ cells (e.g. CD4+, CD8+ or CD3+ T cells) in the tissue orsubject. For example, in one embodiment, the composition comprisingpostcellular signaling factors is administered in an amount sufficientto increase in the tissue or subject one or more of the level oractivity of macrophages, the level or activity of monocytes, the levelor activity of dendritic cells, the level or activity of T cells, andthe level or activity of CD4+, CD8+ or CD3+ cells (e.g. CD4+, CD8+ orCD3+ T cells).

The postcellular signaling factors may also increase immune activity ina cell, tissue or subject by increasing the level or activity of apro-immune cytokine. For example, in some embodiments, the compositioncomprising postcellular signaling factors is administered in an amountsufficient to increase in a cell, tissue or subject the level oractivity of a pro-immune cytokine. In one embodiment, the pro-immunecytokine is selected from IFN-α, IL-1, IL-12, IL-18, IL-2, IL-15, IL-4,IL-6, TNF-α, IL-17 and GMCSF.

The postcellular signaling factors may also increase immune activity ina cell, tissue or subject by increasing the level or activity ofpositive regulators of the immune response such as nuclear factorkappa-light-chain-enhancer of activated B cells (NFkB), interferonregulatory factor (IRF), and stimulator of interferon genes (STING). Forexample, in some embodiments, the composition comprising postcellularsignaling factors is administered in an amount sufficient to increase ina cell, tissue or subject the level or activity of NFkB, IRF and/orSTING.

In some aspects, the disclosure relates to a method of increasing thelevel or activity of NFkB in a cell, tissue or subject, comprisingadministering to the cell, tissue or subject a composition comprisingone or more postcellular signaling factors produced by cells exposed toa stress condition in an amount sufficient to increase the level oractivity of NFkB relative to a cell, tissue or subject that is nottreated with the composition.

In one embodiment, the subject is in need of an increased level oractivity of NFkB.

In one embodiment, the level or activity of NFkB is increased by atleast 10%, 20%, 30%, 40%, 50%, 60%, 70%, 80%, 90% or 100%, or by atleast 2-fold, 4-fold, 6-fold, 8-fold, or 10-fold relative to a cell,tissue or subject that is not treated with the composition comprisingone or more postcellular signaling factors produced by cells exposed toa stress condition.

In some aspects, the disclosure relates to a method of increasing thelevel or activity of IRF or STING in a cell, tissue or subject,comprising administering to the cell, tissue or subject a compositioncomprising one or more postcellular signaling factors produced by cellsexposed to a stress condition in an amount sufficient to increase thelevel or activity of IRF or STING relative to a cell, tissue or subjectthat is not treated with the composition.

In one embodiment, the subject is in need of an increased level oractivity of IRF or STING.

In one embodiment, the level or activity of IRF or STING is increased byat least 10%, 20%, 30%, 40%, 50%, 60%, 70%, 80%, 90% or 100%, or by atleast 2-fold, 4-fold, 6-fold, 8-fold, or 10-fold relative to a cell,tissue or subject that is not treated with the composition comprisingone or more postcellular signaling factors.

In some aspects, the disclosure relates to a method of increasing thelevel or activity of macrophages, monocytes, T cells and/or dendriticcells in a tissue or subject, comprising administering to the tissue orsubject a composition comprising one or more postcellular signalingfactors produced by cells exposed to a stress condition in an amountsufficient to increase the level or activity of macrophages, monocytes,T cells and/or dendritic cells relative to a tissue or subject that isnot treated with the composition.

In one embodiment, the subject is in need of an increased level oractivity of macrophages, monocytes or dendritic cells.

In one embodiment, the level or activity of macrophages, monocytes, Tcells or dendritic cells is increased by at least 10%, 20%, 30%, 40%,50%, 60%, 70%, 80%, 90% or 100%, or by at least 2-fold, 4-fold, 6-fold,8-fold, or 10-fold relative to a tissue or subject that is not treatedwith the composition comprising one or more postcellular signalingfactors.

In some aspects, the disclosure relates to a method of increasing thelevel or activity of CD4+, CD8+, or CD3+ cells in a tissue or subject,comprising administering to the subject a composition comprising one ormore postcellular signaling factors produced by cells exposed to astress condition in an amount sufficient to increase the level oractivity of CD4+, CD8+, or CD3+ cells relative to a tissue or subjectthat is not treated with the composition.

In one embodiment, the subject is in need of an increased level oractivity of CD4+, CD8+, or CD3+ cells.

In one embodiment, the level or activity of CD4+, CD8+, or CD3+ cells isincreased by at least 10%, 20%, 30%, 40%, 50%, 60%, 70%, 80%, 90% or100%, or by at least 2-fold, 4-fold, 6-fold, 8-fold, or 10-fold relativeto a tissue or subject that is not treated with the compositioncomprising one or more postcellular signaling factors.

In some aspects, the disclosure relates to a method of increasing thelevel or activity of a pro-immune cytokine in a cell, tissue or subject,comprising administering to the cell, tissue or subject a compositioncomprising one or more postcellular signaling factors produced by cellsexposed to a stress condition in an amount sufficient to increase thelevel or activity of the pro-immune cytokine relative to a cell, tissueor subject that is not treated with the composition.

In one embodiment, the subject is in need of an increased level oractivity of a pro-immune cytokine.

In one embodiment, the level or activity of the pro-immune cytokine isincreased by at least 10%, 20%, 30%, 40%, 50%, 60%, 70%, 80%, 90% or100%, or by at least 2-fold, 4-fold, 6-fold, 8-fold, or 10-fold relativeto a cell, tissue or subject that is not treated with the compositioncomprising one or more postcellular signaling factors.

In one embodiment, the pro-immune cytokine is selected from IFN-α, IL-1,IL-12, IL-18, IL-2, IL-15, IL-4, IL-6, TNF-α, IL-17 and GMCSF.

In some embodiments, the methods of the invention further include,before administration of the composition comprising one or morepostcellular signaling factors produced by cells exposed to a stresscondition, evaluating the cell, tissue or subject for one or more of thelevel or activity of NFkB; the level or activity of macrophages; thelevel or activity of monocytes; the level or activity of dendriticcells; the level or activity of CD4+ cells, CD8+ cells, or CD3+ cells;the level or activity of T cells; and the level or activity of apro-immune cytokine.

In one embodiment, the methods of the invention further include, afteradministration of the composition comprising one or more postcellularsignaling factors produced by cells exposed to a stress condition,evaluating the cell, tissue or subject for one or more of the level oractivity of NFkB, IRF or STING; the level or activity of macrophages;the level or activity of monocytes; the level or activity of dendriticcells; the level or activity of CD4+ cells, CD8+ cells or CD3+ cells;the level or activity of T cells; and the level or activity of apro-immune cytokine.

Methods of measuring the level or activity of NFkB, IRF or STING; thelevel or activity of macrophages; the level or activity of monocytes;the level or activity of dendritic cells; the level or activity of CD4+cells, CD8+ cells or CD3+ cells; the level or activity of T cells; andthe level or activity of a pro-immune cytokine are known in the art.

For example, the protein level or activity of NFkB, IRF or STING may bemeasured by suitable techniques known in the art including ELISA,Western blot or in situ hybridization. The level of a nucleic acid (e.g.an mRNA) encoding NFkB, IRF or STING may be measured using suitabletechniques known in the art including polymerase chain reaction (PCR)amplification reaction, reverse-transcriptase PCR analysis, quantitativereal-time PCR, single-strand conformation polymorphism analysis (SSCP),mismatch cleavage detection, heteroduplex analysis, Northern blotanalysis, in situ hybridization, array analysis, deoxyribonucleic acidsequencing, restriction fragment length polymorphism analysis, andcombinations or sub-combinations thereof.

Methods for measuring the level and activity of macrophages aredescribed, for example, in Chitu et al., 2011, Curr Protoc Immunol 14:1-33. The level and activity of monocytes may be measured by flowcytometry, as described, for example, in Henning et al., 2015, Journalof Immunological Methods 423: 78-84. The level and activity of dendriticcells may be measured by flow cytometry, as described, for example inDixon et al., 2001, Infect Immun. 69(7): 4351-4357. Each of thesereferences is incorporated by reference herein in its entirety.

The level or activity of T cells may be assessed using a human CD4+T-cell-based proliferative assay. For example, cells are labeled withthe fluorescent dye 5,6-carboxyfluorescein diacetate succinimidyl ester(CFSE). Those cells that proliferate show a reduction in CFSEfluorescence intensity, which is measured directly by flow cytometry.Alternatively, radioactive thymidine incorporation can be used to assessthe rate of growth of the T cells.

In some embodiments, an increase in immune response may be associatedwith reduced activation of regulatory T cells (Tregs). Functionalactivity T regs may be assessed using an in vitro Treg suppressionassay. Such an assay is described in Collinson and Vignali (Methods MolBiol. 2011; 707: 21-37, incorporated by reference in its entiretyherein).

The level or activity of a pro-immune cytokine may be quantified, forexample, in CD8⁺ T cells. In embodiments, the pro-immune cytokine isselected from interferon alpha (IFN-α), interleukin-1 (IL-1), IL-12,IL-18, IL-2, IL-15, IL-4, IL-6, tumor necrosis factor alpha (TNF-α),IL-17, and granulocyte-macrophage colony-stimulating factor (GMCSF).Quantitation can be carried out using the ELISPOT (enzyme-linkedimmunospot) technique, that detects T cells that secrete a givencytokine (e.g. IFN-α) in response to an antigenic stimulation. T cellsare cultured with antigen-presenting cells in wells which have beencoated with, e.g., anti-IFN-α antibodies. The secreted IFN-α is capturedby the coated antibody and then revealed with a second antibody coupledto a chromogenic substrate. Thus, locally secreted cytokine moleculesform spots, with each spot corresponding to one IFN-α-secreting cell.The number of spots allows one to determine the frequency ofIFN-α-secreting cells specific for a given antigen in the analyzedsample. The ELISPOT assay has also been described for the detection ofTNF-α, interleukin-4 (IL-4), IL-6, IL-12, and GMCSF.

In some embodiments, the combinations of a STING agonist and apurinergic receptor agonist described herein may increase immuneactivity in a tissue or subject by increasing the level or activity ofany one or more of the immune cells described herein, for example,macrophages, monocytes, dendritic cells, and CD4+, CD8+ or CD3+ cells(e.g. CD4+, CD8+ or CD3+ T cells) in the tissue or subject. For example,in one embodiment, the STING agonist and the purinergic receptor agonistare administered in an amount sufficient to increase in the tissue orsubject one or more of the level or activity of macrophages, the levelor activity of monocytes, the level or activity of dendritic cells, thelevel or activity of T cells, and the level or activity of CD4+, CD8+ orCD3+ cells (e.g. CD4+, CD8+ or CD3+ T cells).

The combination of the STING agonist and the purinergic receptor agonistmay also increase immune activity in a cell, tissue or subject byincreasing the level or activity of a pro-immune cytokine. For example,in some embodiments, the STING agonist and the purinergic receptoragonist are administered in an amount sufficient to increase in a cell,tissue or subject the level or activity of a pro-immune cytokine. In oneembodiment, the pro-immune cytokine is selected from IFN-α, IL-1, IL-12,IL-18, IL-2, IL-15, IL-4, IL-6, TNF-α, IL-17 and GMCSF.

The combination of the STING agonist and the purinergic receptor agonistmay also increase immune activity in a cell, tissue or subject byincreasing the level or activity of positive regulators of the immuneresponse such as nuclear factor kappa-light-chain-enhancer of activatedB cells (NFkB), interferon regulatory factor (IRF), and stimulator ofinterferon genes (STING). For example, in some embodiments, the STINGagonist and the purinergic receptor agonist are administered in anamount sufficient to increase in a cell, tissue or subject the level oractivity of NFkB, IRF and/or STING.

In some aspects, the disclosure relates to a method of increasing thelevel or activity of NFkB in a cell, tissue or subject, comprisingadministering to the cell, tissue or subject, in combination, a STINGagonist and a purinergic receptor agonist (e.g., P2Y receptor agonist,such as P2Y2, P2Y4 or P2Y6 agonist) in an amount sufficient to increasethe level or activity of NFkB relative to a cell, tissue or subject thatis not treated with the STING agonist and/or the purinergic receptoragonist.

In one embodiment, the subject is in need of an increased level oractivity of NFkB.

In one embodiment, the level or activity of NFkB is increased by atleast 10%, 20%, 30%, 40%, 50%, 60%, 70%, 80%, 90% or 100%, or by atleast 2-fold, 4-fold, 6-fold, 8-fold, or 10-fold relative to a cell,tissue or subject that is not treated with the STING agonist and/or thepurinergic receptor agonist.

In some aspects, the disclosure relates to a method of increasing thelevel or activity of IRF or STING in a cell, tissue or subject,comprising administering to the cell, tissue or subject, in combination,a STING agonist and a purinergic receptor agonist (e.g., P2Y receptoragonist, such as P2Y2, P2Y4 or P2Y6 agonist) in an amount sufficient toincrease the level or activity of IRF or STING relative to a cell,tissue or subject that is not treated with the STING agonist and/or thepurinergic receptor agonist.

In one embodiment, the subject is in need of an increased level oractivity of IRF or STING.

In one embodiment, the level or activity of IRF or STING is increased byat least 10%, 20%, 30%, 40%, 50%, 60%, 70%, 80%, 90% or 100%, or by atleast 2-fold, 4-fold, 6-fold, 8-fold, or 10-fold relative to a cell,tissue or subject that is not treated with the STING agonist and/or thepurinergic receptor agonist.

In some aspects, the disclosure relates to a method of increasing thelevel or activity of macrophages, monocytes, T cells and/or dendriticcells in a tissue or subject, comprising administering to the tissue orsubject, in combination, STING agonist and a purinergic receptor agonist(e.g., P2Y receptor agonist, such as P2Y2, P2Y4 or P2Y6 agonist) in anamount sufficient to increase the level or activity of macrophages,monocytes, T cells and/or dendritic cells relative to a tissue orsubject that is not treated with the STING agonist and/or the purinergicreceptor agonist.

In one embodiment, the subject is in need of an increased level oractivity of macrophages, monocytes or dendritic cells.

In one embodiment, the level or activity of macrophages, monocytes, Tcells or dendritic cells is increased by at least 10%, 20%, 30%, 40%,50%, 60%, 70%, 80%, 90% or 100%, or by at least 2-fold, 4-fold, 6-fold,8-fold, or 10-fold relative to a tissue or subject that is not treatedwith the STING agonist and/or the purinergic receptor agonist.

In some aspects, the disclosure relates to a method of increasing thelevel or activity of CD4+, CD8+, or CD3+ cells in a tissue or subject,comprising administering to the subject, in combination, a STING agonistand apurinergic receptor agonist (e.g., P2Y receptor agonist, such asP2Y2, P2Y4 or P2Y6 agonist) in an amount sufficient to increase thelevel or activity of CD4+, CD8+, or CD3+ cells relative to a tissue orsubject that is not treated with the STING agonist and/or the purinergicreceptor agonist.

In one embodiment, the subject is in need of an increased level oractivity of CD4+, CD8+, or CD3+ cells.

In one embodiment, the level or activity of CD4+, CD8+, or CD3+ cells isincreased by at least 10%, 20%, 30%, 40%, 50%, 60%, 70%, 80%, 90% or100%, or by at least 2-fold, 4-fold, 6-fold, 8-fold, or 10-fold relativeto a tissue or subject that is not treated with the STING agonist and/orthe purinergic receptor agonist.

In some aspects, the disclosure relates to a method of increasing thelevel or activity of a pro-immune cytokine in a cell, tissue or subject,comprising administering to the cell, tissue or subject, in combination,a STING agonist and a purinergic receptor agonist (e.g., P2Y receptoragonist, such as P2Y2, P2Y4 or P2Y6 agonist) in an amount sufficient toincrease the level or activity of the pro-immune cytokine relative to acell, tissue or subject that is not treated with the STING agonistand/or the purinergic receptor agonist.

In one embodiment, the subject is in need of an increased level oractivity of a pro-immune cytokine.

In one embodiment, the level or activity of the pro-immune cytokine isincreased by at least 10%, 20%, 30%, 40%, 50%, 60%, 70%, 80%, 90% or100%, or by at least 2-fold, 4-fold, 6-fold, 8-fold, or 10-fold relativeto a cell, tissue or subject that is not treated with the STING agonistand/or the purinergic receptor agonist.

In one embodiment, the pro-immune cytokine is selected from IFN-α, IL-1,IL-12, IL-18, IL-2, IL-15, IL-4, IL-6, TNF-α, IL-17 and GMCSF.

In some embodiments, the methods of the invention further include,before administration of the combination of the STING agonist and thepurinergic receptor agonist, evaluating the cell, tissue or subject forone or more of the level or activity of NFkB; the level or activity ofmacrophages; the level or activity of monocytes; the level or activityof dendritic cells; the level or activity of CD4+ cells, CD8+ cells, orCD3+ cells; the level or activity of T cells; and the level or activityof a pro-immune cytokine.

In one embodiment, the methods of the invention further include, afteradministration of the combination of the STING agonist and thepurinergic receptor agonist, evaluating the cell, tissue or subject forone or more of the level or activity of NFkB, IRF or STING; the level oractivity of macrophages; the level or activity of monocytes; the levelor activity of dendritic cells; the level or activity of CD4+ cells,CD8+ cells or CD3+ cells; the level or activity of T cells; and thelevel or activity of a pro-immune cytokine.

VI. Methods of Treating Disorders That Would Benefit from IncreasedImmune Activity

Applicants have shown that treatment of target cells (e.g. immune cells)with postcellular signaling factors produced by cells exposed to astress condition (e.g. nutrient deprivation) results in an increase inimmune activity, as evidenced by increases in NFκB and IRF activity inimmune cells. Accordingly, postcellular signaling factors that increaseimmune activity may be used in the treatment of disorders that maybenefit from increased immune activity, such as cancer and infections.

Applicants have also shown that treatment of target cells (e.g. immunecells) with a combination of a STING agonist and a purinergic receptoragonist results in an increase in immune activity, as evidenced byincreases in IRF activity in immune cells. Accordingly, combinations ofa STING agonist and a purinergic receptor agonist (e.g., P2Y receptoragonist, such as P2Y2, P2Y4 or P2Y6 agonist) that increase immuneactivity may be used in the treatment of disorders that may benefit fromincreased immune activity, such as cancer and infections.

Infectious Diseases

As provided herein, postcellular signaling factors produced by cellsexposed to a stress condition can activate immune cells (e.g., T cells,B cells, NK cells, etc.) and, therefore, can enhance immune cellfunctions such as inhibiting bacterial and/or viral infection, and/orrestoring immune surveillance and immune memory function to treatinfection. Accordingly, in some embodiments, the compositions of theinvention, e.g., comprising postcellular signaling factors produced bycells exposed to a stress condition, are used to treat an infection orinfectious disease in a subject, for example, a chronic infection.

As also provided herein, combinations of a STING agonist and apurinergic receptor agonist can activate immune cells (e.g., T cells, Bcells, NK cells, etc.) and, therefore, can enhance immune cell functionssuch as inhibiting bacterial and/or viral infection, and/or restoringimmune surveillance and immune memory function to treat infection.Accordingly, in some embodiments, the combinations of the STING agonistand the purinergic receptor agonist (e.g., P2Y receptor agonist, such asP2Y2, P2Y4 or P2Y6 agonist) are used to treat an infection or infectiousdisease in a subject, for example, a chronic infection.

As used herein, the term “infection” refers to any state in which cellsor a tissue of an organism (i.e., a subject) is infected by aninfectious agent (e.g., a subject has an intracellular pathogeninfection, e.g., a chronic intracellular pathogen infection). As usedherein, the term “infectious agent” refers to a foreign biologicalentity (i.e. a pathogen) in at least one cell of the infected organism.For example, infectious agents include, but are not limited to bacteria,viruses, protozoans, and fungi. Intracellular pathogens are ofparticular interest. Infectious diseases are disorders caused byinfectious agents. Some infectious agents cause no recognizable symptomsor disease under certain conditions, but have the potential to causesymptoms or disease under changed conditions. The subject methods can beused in the treatment of chronic pathogen infections including, but notlimited to, viral infections, e.g., retrovirus, lentivirus, hepadnavirus, herpes viruses, pox viruses, or human papilloma viruses;intracellular bacterial infections, e.g., Mycobacterium, Chlamydophila,Ehrlichia, Rickettsia, Brucella, Legionella, Francisella, Listeria,Coxiella, Neisseria, Salmonella, Yersinia sp, or Helicobacter pylori;and intracellular protozoan pathogens, e.g., Plasmodium sp, Trypanosomasp., Giardia sp., Toxoplasma sp., or Leishmania sp.

Infectious diseases that can be treated using the compositions describedherein include but are not limited to: HIV, Influenza, Herpes, Giardia,Malaria, Leishmania, pathogenic infection by the virus hepatitis (A, B,or C), herpes virus (e.g., VZV, HSV-I, HAV-6, HSV-II, and CMV, EpsteinBarr virus), adenovirus, influenza virus, flaviviruses, echovirus,rhinovirus, coxsackie virus, cornovirus, respiratory syncytial virus,mumps virus, rotavirus, measles virus, rubella virus, parvovirus,vaccinia virus, HTLV virus, dengue virus, papillomavirus, molluscumvirus, poliovirus, rabies virus, JC virus and arboviral encephalitisvirus, pathogenic infection by the bacteria chlamydia, rickettsialbacteria, mycobacteria, staphylococci, streptococci, pneumonococci,meningococci and conococci, Klebsiella, proteus, serratia, pseudomonas,E. coli, Legionella, diphtheria, Salmonella, bacilli, cholera, tetanus,botulism, anthrax, plague, leptospirosis, and Lyme's disease bacteria,pathogenic infection by the fungi Candida (albicans, krusei, glabrata,tropicalis, etc.), Cryptococcus neoformans, Aspergillus (fumigatus,niger, etc.), Genus Mucorales (mucor, absidia, rhizophus), Sporothrixschenkii, Blastomyces dermatitidis, Paracoccidioides brasiliensis,Coccidioides immitis and Histoplasma capsulatum, and pathogenicinfection by the parasites Entamoeba histolytica, Balantidium coli,Naegleria fowleri, Acanthamoeba sp., Giardia lambia, Cryptosporidiumsp., Pneumocystis carinii, Plasmodium vivax, Babesia microti,Trypanosoma brucei, Trypanosoma cruzi, Leishmania donovani, Toxoplasmagondi, and/or Nippostrongylus brasiliensis.

The term “chronic infection” refers to an infection lasting about onemonth or more, for example, for at least one month, two months, threemonths, four months, five months, or six months. In some embodiments, achronic infection is associated with the increased production ofanti-inflammatory chemokines in and/or around the infected area(s).Chronic infections include, but are not limited to, infections by HIV,HPV, Hepatitis B, Hepatitis C, EBV, CMV, M. tuberculosis, andintracellular bacteria and parasites. In some embodiments, the chronicinfection is a bacterial infection. In some embodiments, the chronicinfection is a viral infection.

Cancer

As provided herein, postcellular signaling factors produced by cellsexposed to a stress condition can activate immune cells (e.g., T cells,B cells, NK cells, etc.) and, therefore, can enhance immune cellfunctions such as, for example, that involved in immunotherapies.Accordingly, in certain aspects, the disclosure relates to a method oftreating a subject diagnosed with cancer, comprising administering tothe subject, in combination (a) an immunotherapeutic anti-neoplasticagent and (b) a composition comprising one or more postcellularsignaling factors produced by cells exposed to a stress condition,thereby treating the cancer in the subject.

As also provided herein, the combination of a STING agonist and apurinergic receptor agonist can activate immune cells (e.g., T cells, Bcells, NK cells, etc.) and, therefore, can enhance immune cell functionssuch as, for example, that involved in immunotherapies. Accordingly, incertain aspects, the disclosure relates to a method of treating asubject diagnosed with cancer, comprising administering to the subject,in combination, a STING agonist and a purinergic receptor agonist,thereby treating the cancer in the subject.

The ability of cancer cells to harness a range of complex, overlappingmechanisms to prevent the immune system from distinguishing self fromnon-self represents the fundamental mechanism of cancers to evadeimmunesurveillance. Mechanism(s) include disruption of antigenpresentation, disruption of regulatory pathways controlling T cellactivation or inhibition (immune checkpoint regulation), recruitment ofcells that contribute to immune suppression (Tregs, MDSC) or release offactors that influence immune activity (IDO, PGE2). (See Harris et al.,2013, J Immunotherapy Cancer 1:12; Chen et al., 2013, Immunity 39:1;Pardoll, et al., 2012, Nature Reviews: Cancer 12:252; and Sharma et al.,2015, Cell 161:205, each of which is incorporated by reference herein inits entirety.)

Cancers for treatment using the methods described herein include, forexample, all types of cancer or neoplasm or malignant tumors found inmammals, including, but not limited to: sarcomas, melanomas, carcinomas,leukemias, and lymphomas.

The term “sarcoma” generally refers to a tumor which is made up of asubstance like the embryonic connective tissue and is generally composedof closely packed cells embedded in a fibrillar or homogeneoussubstance. Examples of sarcomas which can be treated with the methods ofthe invention include, for example, a chondrosarcoma, fibrosarcoma,lymphosarcoma, melanosarcoma, myxosarcoma, osteosarcoma, Abemethy'ssarcoma, adipose sarcoma, liposarcoma, alveolar soft part sarcoma,ameloblastic sarcoma, botryoid sarcoma, chloroma sarcoma, choriocarcinoma, embryonal sarcoma, Wilms' tumor sarcoma, endometrial sarcoma,stromal sarcoma, Ewing's sarcoma, fascial sarcoma, fibroblastic sarcoma,giant cell sarcoma, granulocytic sarcoma, Hodgkin's sarcoma, idiopathicmultiple pigmented hemorrhagic sarcoma, immunoblastic sarcoma of Bcells, lymphoma, immunoblastic sarcoma of T-cells, Jensen's sarcoma,Kaposi's sarcoma, Kupffer cell sarcoma, angiosarcoma, leukosarcoma,malignant mesenchymoma sarcoma, parosteal sarcoma, reticulocyticsarcoma, Rous sarcoma, serocystic sarcoma, synovial sarcoma, uterinesarcoma, myxoid liposarcoma, leiomyosarcoma, spindle cell sarcoma,desmoplastic sarcoma, and telangiectaltic sarcoma.

The term “melanoma” is taken to mean a tumor arising from themelanocytic system of the skin and other organs. Melanomas which can betreated with the methods of the invention include, for example,acral-lentiginous melanoma, amelanotic melanoma, benign juvenilemelanoma, Cloudman's melanoma, S91 melanoma, Harding-Passey melanoma,juvenile melanoma, lentigo maligna melanoma, malignant melanoma, nodularmelanoma, subungal melanoma, and superficial spreading melanoma.

The term “carcinoma” refers to a malignant new growth made up ofepithelial cells tending to infiltrate the surrounding tissues and giverise to metastases. Carcinomas which can be treated with the methods ofthe invention, as described herein, include, for example, acinarcarcinoma, acinous carcinoma, adenocystic carcinoma, adenoid cysticcarcinoma, carcinoma adenomatosum, carcinoma of adrenal cortex, alveolarcarcinoma, alveolar cell carcinoma, basal cell carcinoma, carcinomabasocellulare, basaloid carcinoma, basosquamous cell carcinoma,bronchioalveolar carcinoma, bronchiolar carcinoma, bronchogeniccarcinoma, cerebriform carcinoma, cholangiocellular carcinoma, chorioniccarcinoma, colloid carcinoma, colon adenocarcinoma of colon, comedocarcinoma, corpus carcinoma, cribriform carcinoma, carcinoma encuirasse, carcinoma cutaneum, cylindrical carcinoma, cylindrical cellcarcinoma, duct carcinoma, carcinoma durum, embryonal carcinoma,encephaloid carcinoma, epiermoid carcinoma, carcinoma epithelialeadenoides, exophytic carcinoma, carcinoma ex ulcere, carcinoma fibrosum,gelatiniform carcinoma, gelatinous carcinoma, giant cell carcinoma,carcinoma gigantocellulare, glandular carcinoma, granulosa cellcarcinoma, hair-matrix carcinoma, hematoid carcinoma, hepatocellularcarcinoma, Hurthle cell carcinoma, hyaline carcinoma, hypemephroidcarcinoma, infantile embryonal carcinoma, carcinoma in situ,intraepidermal carcinoma, intraepithelial carcinoma, Krompecher'scarcinoma, Kulchitzky-cell carcinoma, large-cell carcinoma, lenticularcarcinoma, carcinoma lenticulare, lipomatous carcinoma, lymphoepithelialcarcinoma, carcinoma medullare, medullary carcinoma, melanoticcarcinoma, carcinoma molle, merkel cell carcinoma, mucinous carcinoma,carcinoma muciparum, carcinoma mucocellulare, mucoepidermoid carcinoma,carcinoma mucosum, mucous carcinoma, carcinoma myxomatodes,nasopharyngeal carcinoma, oat cell carcinoma, carcinoma ossificans,osteoid carcinoma, papillary carcinoma, periportal carcinoma,preinvasive carcinoma, prickle cell carcinoma, pultaceous carcinoma,renal cell carcinoma of kidney, reserve cell carcinoma, carcinomasarcomatodes, schneiderian carcinoma, scirrhous carcinoma, carcinomascroti, signet-ring cell carcinoma, carcinoma simplex, small-cellcarcinoma, solanoid carcinoma, spheroidal cell carcinoma, spindle cellcarcinoma, carcinoma spongiosum, squamous carcinoma, squamous cellcarcinoma, string carcinoma, carcinoma telangiectaticum, carcinomatelangiectodes, transitional cell carcinoma, carcinoma tuberosum,tuberous carcinoma, verrucous carcinoma, cervical squamous cellcarcinoma, tonsil squamous cell carcinoma, and carcinoma villosum. In aparticular embodiment, the cancer is renal cell carcinoma.

The term “leukemia” refers to a type of cancer of the blood or bonemarrow characterized by an abnormal increase of immature white bloodcells called “blasts”. Leukemia is a broad term covering a spectrum ofdiseases. In turn, it is part of the even broader group of diseasesaffecting the blood, bone marrow, and lymphoid system, which are allknown as hematological neoplasms. Leukemias can be divided into fourmajor classifications, acute lymphocytic (or lymphoblastic) leukemia(ALL), acute myelogenous (or myeloid or non-lymphatic) leukemia (AML),chronic lymphocytic leukemia (CLL), and chronic myelogenous leukemia(CML). Further types of leukemia include Hairy cell leukemia (HCL),T-cell prolymphocytic leukemia (T-PLL), large granular lymphocyticleukemia, and adult T-cell leukemia. In certain embodiments, leukemiasinclude acute leukemias. In certain embodiments, leukemias includechronic leukemias.

The term “lymphoma” refers to a group of blood cell tumors that developfrom lymphatic cells. The two main categories of lymphomas are Hodgkinlymphomas (HL) and non-Hodgkin lymphomas (NHL) Lymphomas include anyneoplasms of the lymphatic tissues. The main classes are cancers of thelymphocytes, a type of white blood cell that belongs to both the lymphand the blood and pervades both.

In some embodiments, the compositions are used for treatment of varioustypes of solid tumors, for example breast cancer (e.g. triple negativebreast cancer), bladder cancer, genitourinary tract cancer, coloncancer, rectal cancer, endometrial cancer, kidney (renal cell) cancer,pancreatic cancer, prostate cancer, thyroid cancer (e.g. papillarythyroid cancer), skin cancer, bone cancer, brain cancer, cervicalcancer, liver cancer, stomach cancer, mouth and oral cancers, esophagealcancer, adenoid cystic cancer, neuroblastoma, testicular cancer, uterinecancer, thyroid cancer, head and neck cancer, kidney cancer, lung cancer(e.g. small cell lung cancer, non-small cell lung cancer), mesothelioma,ovarian cancer, sarcoma, stomach cancer, uterine cancer, cervicalcancer, medulloblastoma, and vulvar cancer. In certain embodiments, skincancer includes melanoma, squamous cell carcinoma, and cutaneous T-celllymphoma (CTCL).

Additional cancers which can be treated with the compositions of theinvention include, for example, multiple myeloma, primarythrombocytosis, primary macroglobulinemia, malignant pancreaticinsulanoma, malignant carcinoid, malignant hypercalcemia, endometrialcancer, adrenal cortical cancer, and malignant fibrous histiocytoma.

In some embodiments, the compositions and combination therapiesdescribed herein may be administered to a subject that has previouslyfailed treatment for a cancer with another anti-neoplastic (e.g.chemotherapeutic) regimen. For example, in some embodiments, thecompositions and combination therapies described herein may beadministered to a subject that has failed treatment for a cancer with ananti-neoplastic regimen comprising administration of one or more STINGagonists. A “subject who has failed an anti-neoplastic regimen” is asubject with cancer that does not respond, or ceases to respond totreatment with a anti-neoplastic regimen per RECIST 1.1 criteria, i.e.,does not achieve a complete response, partial response, or stabledisease in the target lesion; or does not achieve complete response ornon-CR/non-PD of non-target lesions, either during or after completionof the anti-neoplastic regimen, either alone or in conjunction withsurgery and/or radiation therapy which, when possible, are oftenclinically indicated in conjunction with anti-neoplastic therapy. TheRECIST 1.1 criteria are described, for example, in Eisenhauer et al.,2009, Eur. J. Cancer 45:228-24 (which is incorporated herein byreference in its entirety), and discussed in greater detail below. Afailed anti-neoplastic regimen results in, e.g., tumor growth, increasedtumor burden, and/or tumor metastasis. A failed anti-neoplastic regimenas used herein includes a treatment regimen that was terminated due to adose limiting toxicity, e.g., a grade III or a grade IV toxicity thatcannot be resolved to allow continuation or resumption of treatment withthe anti-neoplastic agent or regimen that caused the toxicity. In oneembodiment, the subject has failed treatment with a anti-neoplasticregimen comprising administration of one or more anti-angiogenic agents.

A failed anti-neoplastic regimen includes a treatment regimen that doesnot result in at least stable disease for all target and non-targetlesions for an extended period, e.g., at least 1 month, at least 2months, at least 3 months, at least 4 months, at least 5 months, atleast 6 months, at least 12 months, at least 18 months, or any timeperiod less than a clinically defined cure. A failed anti-neoplasticregimen includes a treatment regimen that results in progressive diseaseof at least one target lesion during treatment with the anti-neoplasticagent, or results in progressive disease less than 2 weeks, less than 1month, less than two months, less than 3 months, less than 4 months,less than 5 months, less than 6 months, less than 12 months, or lessthan 18 months after the conclusion of the treatment regimen, or lessthan any time period less than a clinically defined cure.

A failed anti-neoplastic regimen does not include a treatment regimenwherein the subject treated for a cancer achieves a clinically definedcure, e.g., 5 years of complete response after the end of the treatmentregimen, and wherein the subject is subsequently diagnosed with adistinct cancer, e.g., more than 5 years, more than 6 years, more than 7years, more than 8 years, more than 9 years, more than 10 years, morethan 11 years, more than 12 years, more than 13 years, more than 14years, or more than 15 years after the end of the treatment regimen.

RECIST criteria are clinically accepted assessment criteria used toprovide a standard approach to solid tumor measurement and providedefinitions for objective assessment of change in tumor size for use inclinical trials. Such criteria can also be used to monitor response ofan individual undergoing treatment for a solid tumor. The RECIST 1.1criteria are discussed in detail in Eisenhauer et al., 2009, Eur. J.Cancer 45:228-24, which is incorporated herein by reference. Responsecriteria for target lesions include:

Complete Response (CR): Disappearance of all target lesions. Anypathological lymph nodes (whether target or non-target) must have areduction in short axis to <10 mm.

Partial Response (PR): At least a 30% decrease in the sum of diametersof target lesion, taking as a reference the baseline sum diameters.

Progressive Diseases (PD): At least a 20% increase in the sum ofdiameters of target lesions, taking as a reference the smallest sum onthe study (this includes the baseline sum if that is the smallest on thestudy). In addition to the relative increase of 20%, the sum must alsodemonstrate an absolute increase of at least 5 mm. (Note: the appearanceof one or more new lesions is also considered progression.)

Stable Disease (SD): Neither sufficient shrinkage to qualify for PR norsufficient increase to qualify for PD, taking as a reference thesmallest sum diameters while on study.

RECIST 1.1 criteria also consider non-target lesions which are definedas lesions that may be measureable, but need not be measured, and shouldonly be assessed qualitatively at the desired time points. Responsecriteria for non-target lesions include:

Complete Response (CR): Disappearance of all non-target lesions andnormalization of tumor marker levels. All lymph nodes must benon-pathological in size (<10 mm short axis).

Non-CR/Non-PD: Persistence of one or more non-target lesion(s) and/ormaintenance of tumor marker level above the normal limits.

Progressive Disease (PD): Unequivocal progression of existing non-targetlesions. The appearance of one or more new lesions is also consideredprogression. To achieve “unequivocal progression” on the basis ofnon-target disease, there must be an overall level of substantialworsening of non-target disease such that, even in the presence of SD orPR in target disease, the overall tumor burden has increasedsufficiently to merit discontinuation of therapy. A modest “increase” inthe size of one or more non-target lesions is usually not sufficient toqualify for unequivocal progression status. The designation of overallprogression solely on the basis of change in non-target disease in theface of SD or PR in target disease will therefore be extremely rare.

In some embodiments, the pharmaceutical compositions and combinationtherapies described herein may be administered to a subject having arefractory cancer. A “refractory cancer” is a malignancy for whichsurgery is ineffective, which is either initially unresponsive to chemo-or radiation therapy, or which becomes unresponsive to chemo- orradiation therapy over time.

The invention further provides methods of inhibiting tumor cell growthin a subject, comprising administering a composition comprising one ormore postcellular signaling factors to the subject, such that tumor cellgrowth is inhibited. In certain embodiments, treating cancer comprisesextending survival or extending time to tumor progression as compared toa control. In some embodiments, the control is a subject that is nottreated with the composition comprising one or more postcellularsignaling factors. In some embodiments, the control is not treated withthe composition comprising one or more postcellular signaling factors,but is treated with another therapeutic agent, for example, one or moreof the additional therapeutic agents described herein. In certainembodiments, the subject is a human subject. In some embodiments, thesubject is identified as having a tumor prior to administration of thefirst dose of the composition comprising one or more postcellularsignaling factors. In certain embodiments, the subject has a tumor atthe time of the first administration of the composition comprising oneor more postcellular signaling factors.

In one embodiment, administration of the composition comprising one ormore postcellular signaling factors results in one or more of reducingtumor size, weight or volume, increasing time to progression, inhibitingtumor growth and/or prolonging the survival time of a subject having anoncological disorder. In certain embodiments, administration of thecomposition comprising one or more postcellular signaling factorsreduces tumor size, weight or volume, increases time to progression,inhibits tumor growth and/or prolongs the survival time of the subjectby at least 1%, 2%, 3%, 4%, 5%, 10%, 20%, 30%, 40%, 50%, 60%, 70%, 80%,90%, 100%, 200%, 300%, 400% or 500% relative to a corresponding controlsubject, e.g. a subject that is not administered the compositioncomprising one or more postcellular signaling factors. In certainembodiments, administration of the composition comprising one or morepostcellular signaling factors reduces tumor size, weight or volume,increases time to progression, inhibits tumor growth and/or prolongs thesurvival time of a population of subjects afflicted with an oncologicaldisorder by at least 1%, 2%, 3% 4%, 5%, 10%, 20%, 30%, 40%, 50%, 60%,70%, 80%, 90%, 100%, 200%, 300%, 400% or 500% relative to acorresponding population of control subjects afflicted with theoncological disorder that is not administered the composition comprisingone or more postcellular signaling factors. In other embodiments,administration of the composition comprising one or more postcellularsignaling factors stabilizes the oncological disorder in a subject witha progressive oncological disorder prior to treatment.

The disclosure further provides methods of inhibiting tumor cell growthin a subject, comprising administering, in combination, a STING agonistand a purinergic receptor agonist, such that tumor cell growth isinhibited. In certain embodiments, treating cancer comprises extendingsurvival or extending time to tumor progression as compared to acontrol. In some embodiments, the control is a subject that is nottreated with STING agonist or the purinergic receptor agonist. In someembodiments, the control is a subject that is treated with the STINGagonist, but is not treated with the purinergic receptor agonist. Insome embodiments, the control is a subject that is not treated with theSTING agonist but is treated with the purinergic receptor agonist. Incertain embodiments, the subject is a human subject. In someembodiments, the subject is identified as having a tumor prior toadministration of the first dose of the STING agonist and/or thepurinergic receptor agonist. In certain embodiments, the subject has atumor at the time of the first administration of the STING agonistand/or the purinergic receptor agonist.

In one embodiment, administration of the STING agonist and thepurinergic receptor agonist results in one or more of reducing tumorsize, weight or volume, increasing time to progression, inhibiting tumorgrowth and/or prolonging the survival time of a subject having anoncological disorder. In certain embodiments, administration of theSTING agonist and the purinergic receptor agonist reduces tumor size,weight or volume, increases time to progression, inhibits tumor growthand/or prolongs the survival time of the subject by at least 1%, 2%, 3%,4%, 5%, 10%, 20%, 30%, 40%, 50%, 60%, 70%, 80%, 90%, 100%, 200%, 300%,400% or 500% relative to a corresponding control subject that is notadministered the STING agoinst and/or the purinergic receptor agonist.In certain embodiments, administration of the STING agonist andpurinergic receptor agonist reduces tumor size, weight or volume,increases time to progression, inhibits tumor growth and/or prolongs thesurvival time of a population of subjects afflicted with an oncologicaldisorder by at least 1%, 2%, 3%, 4%, 5%, 10%, 20%, 30%, 40%, 50%, 60%,70%, 80%, 90%, 100%, 200%, 300%, 400% or 500% relative to acorresponding population of control subjects afflicted with theoncological disorder that is not administered the STING agonist and/orthe purinergic receptor agonist. In other embodiments, administration ofthe STING agonist and purinergic receptor agonist stabilizes theoncological disorder in a subject with a progressive oncologicaldisorder prior to treatment.

Combination Therapies

In some embodiments, the terms “administering in combination”,“combination therapy”, “co-administering” or “co-administration” referto administration of a composition comprising one or more postcellularsignaling factors (produced by cells exposed to a stress condition)prior to, concurrently or substantially concurrently with, subsequentlyto, or intermittently with administration of one or more additionaltherapeutic agents. In certain embodiments, the composition comprisingone or more postcellular signaling factors is administered prior toadministration of the one or more additional therapeutic agents. Incertain embodiments, the composition comprising one or more postcellularsignaling factors is administered concurrently with the immunecheckpoint modulator. In certain embodiments, the composition comprisingone or more postcellular signaling factors is administered afteradministration of the immune checkpoint modulator.

The postcellular signaling factors and the immune checkpoint modulatorcan act additively or synergistically. In one embodiment, the one ormore postcellular signaling factors and the one or more additionaltherapeutic agents act synergistically. In some embodiments thesynergistic effects are in the treatment of an oncological disorder oran infection. For example, in one embodiment, the combination of the oneor more postcellular signaling factors and the one or more additionaltherapeutic agents improves the durability, i.e. extends the duration,of the immune response against a cancer. In some embodiments, the one ormore postcellular signaling factors and the one or more additionaltherapeutic agents act additively.

In some embodiments, the additional therapeutic agent administered incombination with the composition comprising one or more postcellularsignaling factors is a Stimulator of Interferon Genes (STING) agonist.Accordingly, in certain aspects, the disclosure relates to a method ofincreasing immune activity in a target cell, tissue or subject, themethod comprising administering to the target cell, tissue or subject,in combination (a) a composition comprising one or more postcellularsignaling factors produced by cells exposed to a stress condition, and(b) a Stimulator of Interferon Genes (STING) agonist, wherein thecomposition and the STING agonist are administered in an amountsufficient to increase the immune activity relative to a cell, tissue orsubject that is not treated with the composition and/or the STINGagonist.

In some embodiments, the terms “administering in combination”,“combination therapy”, “co-administering” or “co-administration” referto administration of a STING agonist prior to, concurrently orsubstantially concurrently with, subsequently to, or intermittently withadministration of a purinergic receptor agonist (e.g., P2Y receptoragonist, such as P2Y2, P2Y4 or P2Y6 agonist). In certain embodiments,the STING agonist is administered prior to administration of thepurinergic receptor agonist. In certain embodiments, the STING agonistis administered concurrently with the purinergic receptor agonist. Incertain embodiments, the STING agonist is administered afteradministration of the purinergic receptor agonist.

The STING agonist and the purinergic receptor agonist can act additivelyor synergistically. In one embodiment, the STING agonist and thepurinergic receptor agonist act synergistically. In some embodiments thesynergistic effects are in the treatment of an oncological disorder oran infection. For example, in one embodiment, the combination of theSTING agonist and purinergic receptor agonist improves the durability,i.e. extends the duration, of the immune response against a cancer. Insome embodiments, the STING agonist and the purinergic receptor agonistact additively.

The terms “administering in combination”, “combination therapy”,“co-administering” or “co-administration” may also refer toadministration of the combination of the STING agonist and thepurinergic receptor agonist in further combination with one or moreadditional therapeutic agents. The one or more additional therapeuticagents may be administered prior to, concurrently or substantiallyconcurrently with, subsequently to, or intermittently withadministration of the STING agonist and/or the purinergic receptoragonist. In certain embodiments, the one or more additional therapeuticagents is administered prior to administration of the STING agonistand/or the purinergic receptor agonist. In certain embodiments, the oneor more additional therapeutic agents is administered concurrently withthe STING agonist and/or the purinergic receptor agonist. In certainembodiments, the one or more additional therapeutic agents isadministered after administration of the STING agonist and/or thepurinergic receptor agonist.

The one or more additional therapeutic agents and the STING agonistand/or the purinergic receptor agonist can act additively orsynergistically. In one embodiment, the one or more additionaltherapeutic agents and the STING agonist and/or the purinergic receptoragonist act synergistically. In some embodiments the synergistic effectsare in the treatment of an oncological disorder or an infection. Forexample, in one embodiment, the combination of the one or moreadditional therapeutic agents and the STING agonist and/or thepurinergic receptor agonist improves the durability, i.e. extends theduration, of the immune response against a cancer. In some embodiments,the one or more additional therapeutic agents and the STING agonistand/or the purinergic receptor agonist act additively.

1. Immune Checkpoint Modulators

In some embodiments, the additional therapeutic agent administered incombination with the composition comprising one or more postcellularsignaling factors is an immune checkpoint modulator of an immunecheckpoint molecule. In some embodiments, the additional therapeuticagent administered in combination with the STING agonist and thepurinergic receptor agonist is an immune checkpoint modulator of animmune checkpoint molecule. Examples of immune checkpoint moleculesinclude LAG-3 (Triebel et al., 1990, J. Exp. Med. 171: 1393-1405), TIM-3(Sakuishi et al., 2010, J. Exp. Med. 207: 2187-2194), VISTA (Wang etal., 2011, J. Exp. Med. 208: 577-592), ICOS (Fan et al., 2014, J. Exp.Med. 211: 715-725), OX40 (Curti et al., 2013, Cancer Res. 73: 7189-7198)and 4-1BB (Melero et al., 1997, Nat. Med. 3: 682-685).

Immune checkpoints may be stimulatory immune checkpoints (i.e. moleculesthat stimulate the immune response) or inhibitory immune checkpoints(i.e. molecules that inhibit immune response). In some embodiments, theimmune checkpoint modulator is an antagonist of an inhibitory immunecheckpoint. In some embodiments, the immune checkpoint modulator is anagonist of a stimulatory immune checkpoint. In some embodiments, theimmune checkpoint modulator is an immune checkpoint binding protein(e.g., an antibody, antibody Fab fragment, divalent antibody, antibodydrug conjugate, scFv, fusion protein, bivalent antibody, or tetravalentantibody). In certain embodiments, the immune checkpoint modulator iscapable of binding to, or modulating the activity of more than oneimmune checkpoint. Examples of stimulatory and inhibitory immunecheckpoints, and molecules that modulate these immune checkpoints thatmay be used in the methods of the invention, are provided below.

i. Stimulatory Immune Checkpoint Molecules

CD27 supports antigen-specific expansion of naïve T cells and is vitalfor the generation of T cell memory (see, e.g., Hendriks et al. (2000)Nat. Immunol. 171 (5): 433-40). CD27 is also a memory marker of B cells(see, e.g., Agematsu et al. (2000) Histol. Histopathol. 15 (2): 573-6.CD27 activity is governed by the transient availability of its ligand,CD70, on lymphocytes and dendritic cells (see, e.g., Borst et al. (2005)Curr. Opin. Immunol. 17 (3): 275-81). Multiple immune checkpointmodulators specific for CD27 have been developed and may be used asdisclosed herein. In some embodiments, the immune checkpoint modulatoris an agent that modulates the activity and/or expression of CD27. Insome embodiments, the immune checkpoint modulator is an agent that bindsto CD27 (e.g., an anti-CD27 antibody). In some embodiments, thecheckpoint modulator is a CD27 agonist. In some embodiments, thecheckpoint modulator is a CD27 antagonist. In some embodiments, theimmune checkpoint modulator is an CD27-binding protein (e.g., anantibody). In some embodiments, the immune checkpoint modulator isvarlilumab (Celldex Therapeutics). Additional CD27-binding proteins(e.g., antibodies) are known in the art and are disclosed, e.g., in U.S.Pat. Nos. 9,248,183, 9,102,737, 9,169,325, 9,023,999, 8,481,029; U.S.Patent Application Publication Nos. 2016/0185870, 2015/0337047,2015/0299330, 2014/0112942, 2013/0336976, 2013/0243795, 2013/0183316,2012/0213771, 2012/0093805, 2011/0274685, 2010/0173324; and PCTPublication Nos. WO 2015/016718, WO 2014/140374, WO 2013/138586, WO2012/004367, WO 2011/130434, WO 2010/001908, and WO 2008/051424, each ofwhich is incorporated by reference herein.

CD28. Cluster of Differentiation 28 (CD28) is one of the proteinsexpressed on T cells that provide co-stimulatory signals required for Tcell activation and survival. T cell stimulation through CD28 inaddition to the T-cell receptor (TCR) can provide a potent signal forthe production of various interleukins (IL-6 in particular). Bindingwith its two ligands, CD80 and CD86, expressed on dendritic cells,prompts T cell expansion (see, e.g., Prasad et al. (1994) Proc. Nat'l.Acad. Sci. USA 91(7): 2834-8). Multiple immune checkpoint modulatorsspecific for CD28 have been developed and may be used as disclosedherein. In some embodiments, the immune checkpoint modulator is an agentthat modulates the activity and/or expression of CD28. In someembodiments, the immune checkpoint modulator is an agent that binds toCD28 (e.g., an anti-CD28 antibody). In some embodiments, the checkpointmodulator is an CD28 agonist. In some embodiments, the checkpointmodulator is an CD28 antagonist. In some embodiments, the immunecheckpoint modulator is an CD28-binding protein (e.g., an antibody). Insome embodiments, the immune checkpoint modulator is selected from thegroup consisting of TAB08 (TheraMab LLC), lulizumab (also known asBMS-931699, Bristol-Myers Squibb), and FR104 (OSE Immunotherapeutics).Additional CD28-binding proteins (e.g., antibodies) are known in the artand are disclosed, e.g., in U.S. Pat. Nos. 9,119,840, 8,709,414,9,085,629, 8,034,585, 7,939,638, 8,389,016, 7,585,960, 8,454,959,8,168,759, 8,785,604, 7,723,482; U.S. Patent Application PublicationNos. 2016/0017039, 2015/0299321, 2015/0150968, 2015/0071916,2015/0376278, 2013/0078257, 2013/0230540, 2013/0078236, 2013/0109846,2013/0266577, 2012/0201814, 2012/0082683, 2012/0219553, 2011/0189735,2011/0097339, 2010/0266605, 2010/0168400, 2009/0246204, 2008/0038273;and PCT Publication Nos. WO 2015198147, WO 2016/05421, WO 2014/1209168,WO 2011/101791, WO 2010/007376, WO 2010/009391, WO 2004/004768, WO2002/030459, WO 2002/051871, and WO 2002/047721, each of which isincorporated by reference herein.

CD40. Cluster of Differentiation 40 (CD40, also known as TNFRSF5) isfound on a variety of immune system cells including antigen presentingcells. CD40L, otherwise known as CD154, is the ligand of CD40 and istransiently expressed on the surface of activated CD4⁺ T cells. CD40signaling is known to ‘license’ dendritic cells to mature and therebytrigger T-cell activation and differentiation (see, e.g., O'Sullivan etal. (2003) Crit. Rev. Immunol. 23 (1): 83-107. Multiple immunecheckpoint modulators specific for CD40 have been developed and may beused as disclosed herein. In some embodiments, the immune checkpointmodulator is an agent that modulates the activity and/or expression ofCD40. In some embodiments, the immune checkpoint modulator is an agentthat binds to CD40 (e.g., an anti-CD40 antibody). In some embodiments,the checkpoint modulator is a CD40 agonist. In some embodiments, thecheckpoint modulator is an CD40 antagonist. In some embodiments, theimmune checkpoint modulator is a CD40-binding protein selected from thegroup consisting of dacetuzumab (Genentech/Seattle Genetics), CP-870,893(Pfizer), bleselumab (Astellas Pharma), lucatumumab (Novartis), CFZ533(Novartis; see, e.g., Cordoba et al. (2015) Am. J. Transplant. 15(11):2825-36), RG7876 (Genentech Inc.), FFP104 (PanGenetics, B.V.), APX005(Apexigen), BI 655064 (Boehringer Ingelheim), Chi Lob 7/4 (CancerResearch UK; see, e.g., Johnson et al. (2015) Clin. Cancer Res. 21(6):1321-8), ADC-1013 (BioInvent International), SEA-CD40 (SeattleGenetics), XmAb 5485 (Xencor), PG120 (PanGenetics B.V.), teneliximab(Bristol-Myers Squibb; see, e.g., Thompson et al. (2011) Am. J.Transplant. 11(5): 947-57), and AKH3 (Biogen; see, e.g., InternationalPublication No. WO 2016/028810). Additional CD40-binding proteins (e.g.,antibodies) are known in the art and are disclosed, e.g., in U.S. Pat.Nos. 9,234,044, 9,266,956, 9,109,011, 9,090,696, 9,023,360, 9,023,361,9,221,913, 8,945,564, 8,926,979, 8,828,396, 8,637,032, 8,277,810,8,088,383, 7,820,170, 7,790,166, 7,445,780, 7,361,345, 8,961,991,8,669,352, 8,957,193, 8,778,345, 8,591,900, 8,551,485, 8,492,531,8,362,210, 8,388,971; U.S. Patent Application Publication Nos.2016/0045597, 2016/0152713, 2016/0075792, 2015/0299329, 2015/00574372015/0315282, 2015/0307616, 2014/0099317, 2014/0179907, 2014/0349395,2014/0234344, 2014/0348836, 2014/0193405, 2014/0120103, 2014/0105907,2014/0248266, 2014/0093497, 2014/0010812, 2013/0024956, 2013/0023047,2013/0315900, 2012/0087927, 2012/0263732, 2012/0301488, 2011/0027276,2011/0104182, 2010/0234578, 2009/0304687, 2009/0181015, 2009/0130715,2009/0311254, 2008/0199471, 2008/0085531, 2016/0152721, 2015/0110783,2015/0086991, 2015/0086559, 2014/0341898, 2014/0205602, 2014/0004131,2013/0011405, 2012/0121585, 2011/0033456, 2011/0002934, 2010/0172912,2009/0081242, 2009/0130095, 2008/0254026, 2008/0075727, 2009/0304706,2009/0202531, 2009/0117111, 2009/0041773, 2008/0274118, 2008/0057070,2007/0098717, 2007/0218060, 2007/0098718, 2007/0110754; and PCTPublication Nos. WO 2016/069919, WO 2016/023960, WO 2016/023875, WO2016/028810, WO 2015/134988, WO 2015/091853, WO 2015/091655, WO2014/065403, WO 2014/070934, WO 2014/065402, WO 2014/207064, WO2013/034904, WO 2012/125569, WO 2012/149356, WO 2012/111762, WO2012/145673, WO 2011/123489, WO 2010/123012, WO 2010/104761, WO2009/094391, WO 2008/091954, WO 2007/129895, WO 2006/128103, WO2005/063289, WO 2005/063981, WO 2003/040170, WO 2002/011763, WO2000/075348, WO 2013/164789, WO 2012/075111, WO 2012/065950, WO2009/062054, WO 2007/124299, WO 2007/053661, WO 2007/053767, WO2005/044294, WO 2005/044304, WO 2005/044306, WO 2005/044855, WO2005/044854, WO 2005/044305, WO 2003/045978, WO 2003/029296, WO2002/028481, WO 2002/028480, WO 2002/028904, WO 2002/028905, WO2002/088186, and WO 2001/024823, each of which is incorporated byreference herein.

CD122. CD122 is the Interleukin-2 receptor beta sub-unit and is known toincrease proliferation of CD8⁺ effector T cells. See, e.g., Boyman etal. (2012) Nat. Rev. Immunol. 12 (3): 180-190. Multiple immunecheckpoint modulators specific for CD122 have been developed and may beused as disclosed herein. In some embodiments, the immune checkpointmodulator is an agent that modulates the activity and/or expression ofCD122. In some embodiments, the immune checkpoint modulator is an agentthat binds to CD122 (e.g., an anti-CD122 antibody). In some embodiments,the checkpoint modulator is an CD122 agonist. In some embodiments, thecheckpoint modulator is an CD22 agonist. In some embodiments, the immunecheckpoint modulator is humanized MiK-Beta-1 (Roche; see, e.g., Morriset al. (2006) Proc Nat'l. Acad. Sci. USA 103(2): 401-6, which isincorporated by reference). Additional CD122-binding proteins (e.g.,antibodies) are known in the art and are disclosed, e.g., in U.S. Pat.No. 9,028,830, which is incorporated by reference herein.

OX40. The OX40 receptor (also known as CD134) promotes the expansion ofeffector and memory T cells. OX40 also suppresses the differentiationand activity of T-regulatory cells, and regulates cytokine production(see, e.g., Croft et al. (2009) Immunol. Rev. 229(1): 173-91). Multipleimmune checkpoint modulators specific for OX40 have been developed andmay be used as disclosed herein. In some embodiments, the immunecheckpoint modulator is an agent that modulates the activity and/orexpression of OX40. In some embodiments, the immune checkpoint modulatoris an agent that binds to OX40 (e.g., an anti-OX40 antibody). In someembodiments, the checkpoint modulator is an OX40 agonist. In someembodiments, the checkpoint modulator is an OX40 antagonist. In someembodiments, the immune checkpoint modulator is a OX40-binding protein(e.g., an antibody) selected from the group consisting of MEDI6469(AgonOx/Medimmune), pogalizumab (also known as MOXR0916 and RG7888;Genentech, Inc.), tavolixizumab (also known as MEDI0562; Medimmune), andGSK3174998 (GlaxoSmithKline). Additional OX-40-binding proteins (e.g.,antibodies) are known in the art and are disclosed, e.g., in U.S. Pat.Nos. 9,163,085, 9,040,048, 9,006,396, 8,748,585, 8,614,295, 8,551,477,8,283,450, 7,550,140; U.S. Patent Application Publication Nos.2016/0068604, 2016/0031974, 2015/0315281, 2015/0132288, 2014/0308276,2014/0377284, 2014/0044703, 2014/0294824, 2013/0330344, 2013/0280275,2013/0243772, 2013/0183315, 2012/0269825, 2012/0244076, 2011/0008368,2011/0123552, 2010/0254978, 2010/0196359, 2006/0281072; and PCTPublication Nos. WO 2014/148895, WO 2013/068563, WO 2013/038191, WO2013/028231, WO 2010/096418, WO 2007/062245, and WO 2003/106498, each ofwhich is incorporated by reference herein.

GITR. Glucocorticoid-induced TNFR family related gene (GITR) is a memberof the tumor necrosis factor receptor (TNFR) superfamily that isconstitutively or conditionally expressed on Treg, CD4, and CD8 T cells.GITR is rapidly upregulated on effector T cells following TCR ligationand activation. The human GITR ligand (GITRL) is constitutivelyexpressed on APCs in secondary lymphoid organs and some nonlymphoidtissues. The downstream effect of GITR:GITRL interaction inducesattenuation of Treg activity and enhances CD4⁺ T cell activity,resulting in a reversal of Treg-mediated immunosuppression and increasedimmune stimulation. Multiple immune checkpoint modulators specific forGITR have been developed and may be used as disclosed herein. In someembodiments, the immune checkpoint modulator is an agent that modulatesthe activity and/or expression of GITR. In some embodiments, the immunecheckpoint modulator is an agent that binds to GITR (e.g., an anti-GITRantibody). In some embodiments, the checkpoint modulator is an GITRagonist. In some embodiments, the checkpoint modulator is an GITRantagonist. In some embodiments, the immune checkpoint modulator is aGITR-binding protein (e.g., an antibody) selected from the groupconsisting of TRX518 (Leap Therapeutics), MK-4166 (Merck & Co.),MEDI-1873 (MedImmune), INCAGN1876 (Agenus/Incyte), and FPA154 (FivePrime Therapeutics). Additional GITR-binding proteins (e.g., antibodies)are known in the art and are disclosed, e.g., in U.S. Pat. Nos.9,309,321, 9,255,152, 9,255,151, 9,228,016, 9,028,823, 8,709,424,8,388,967; U.S. Patent Application Publication Nos. 2016/0145342,2015/0353637, 2015/0064204, 2014/0348841, 2014/0065152, 2014/0072566,2014/0072565, 2013/0183321, 2013/0108641, 2012/0189639; and PCTPublication Nos. WO 2016/054638, WO 2016/057841, WO 2016/057846, WO2015/187835, WO 2015/184099, WO 2015/031667, WO 2011/028683, and WO2004/107618, each of which is incorporated by reference herein.

ICOS. Inducible T-cell costimulator (ICOS, also known as CD278) isexpressed on activated T cells. Its ligand is ICOSL, which is expressedmainly on B cells and dendritic cells. ICOS is important in T celleffector function. ICOS expression is up-regulated upon T cellactivation (see, e.g., Fan et al. (2014) J. Exp. Med. 211(4): 715-25).Multiple immune checkpoint modulators specific for ICOS have beendeveloped and may be used as disclosed herein. In some embodiments, theimmune checkpoint modulator is an agent that modulates the activityand/or expression of ICOS. In some embodiments, the immune checkpointmodulator is an agent that binds to ICOS (e.g., an anti-ICOS antibody).In some embodiments, the checkpoint modulator is an ICOS agonist. Insome embodiments, the checkpoint modulator is an ICOS antagonist. Insome embodiments, the immune checkpoint modulator is a ICOS-bindingprotein (e.g., an antibody) selected from the group consisting ofMEDI-570 (also known as JMab-136, Medimmune), GSK3359609(GlaxoSmithKline/INSERM), and JTX-2011 (Jounce Therapeutics). AdditionalICOS-binding proteins (e.g., antibodies) are known in the art and aredisclosed, e.g., in U.S. Pat. Nos. 9,376,493, 7,998,478, 7,465,445,7,465,444; U.S. Patent Application Publication Nos. 2015/0239978,2012/0039874, 2008/0199466, 2008/0279851; and PCT Publication No. WO2001/087981, each of which is incorporated by reference herein.

4-1BB. 4-1BB (also known as CD137) is a member of the tumor necrosisfactor (TNF) receptor superfamily. 4-1BB (CD137) is a type IItransmembrane glycoprotein that is inducibly expressed on primed CD4⁺and CD8⁺ T cells, activated NK cells, DCs, and neutrophils, and acts asa T cell costimulatory molecule when bound to the 4-1BB ligand (4-1BBL)found on activated macrophages, B cells, and DCs. Ligation of the 4-1BBreceptor leads to activation of the NF-κB, c-Jun and p38 signalingpathways and has been shown to promote survival of CD8⁺ T cells,specifically, by upregulating expression of the antiapoptotic genesBcL-x(L) and Bfl-1. In this manner, 4-1BB serves to boost or evensalvage a suboptimal immune response. Multiple immune checkpointmodulators specific for 4-1BB have been developed and may be used asdisclosed herein. In some embodiments, the immune checkpoint modulatoris an agent that modulates the activity and/or expression of 4-1BB. Insome embodiments, the immune checkpoint modulator is an agent that bindsto 4-1BB (e.g., an anti-4-1BB antibody). In some embodiments, thecheckpoint modulator is an 4-1BB agonist. In some embodiments, thecheckpoint modulator is an 4-1BB antagonist. In some embodiments, theimmune checkpoint modulator is a 4-1BB-binding protein is urelumab (alsoknown as BMS-663513; Bristol-Myers Squibb) or utomilumab (Pfizer). Insome embodiments, the immune checkpoint modulator is a 4-1BB-bindingprotein (e.g., an antibody). 4-1BB-binding proteins (e.g., antibodies)are known in the art and are disclosed, e.g., in U.S. Pat. Nos.9,382,328, 8,716,452, 8,475,790, 8,137,667, 7,829,088, 7,659,384; U.S.Patent Application Publication Nos. 2016/0083474, 2016/0152722,2014/0193422, 2014/0178368, 2013/0149301, 2012/0237498, 2012/0141494,2012/0076722, 2011/0177104, 2011/0189189, 2010/0183621, 2009/0068192,2009/0041763, 2008/0305113, 2008/0008716; and PCT Publication Nos. WO2016/029073, WO 2015/188047, WO 2015/179236, WO 2015/119923, WO2012/032433, WO 2012/145183, WO 2011/031063, WO 2010/132389, WO2010/042433, WO 2006/126835, WO 2005/035584, WO 2004/010947; andMartinez-Forero et al. (2013) J. Immunol. 190(12): 6694-706, and Dubrotet al. (2010) Cancer Immunol. Immunother. 59(8): 1223-33, each of whichis incorporated by reference herein.

ii. Inhibitory Immune Checkpoint Molecules

ADORA2A. The adenosine A2A receptor (A2A4) is a member of the Gprotein-coupled receptor (GPCR) family which possess seven transmembranealpha helices, and is regarded as an important checkpoint in cancertherapy. A2A receptor can negatively regulate overreactive immune cells(see, e.g., Ohta et al. (2001) Nature 414(6866): 916-20). Multipleimmune checkpoint modulators specific for ADORA2A have been developedand may be used as disclosed herein. In some embodiments, the immunecheckpoint modulator is an agent that modulates the activity and/orexpression of ADORA2A. In some embodiments, the immune checkpointmodulator is an agent that binds to ADORA2A (e.g., an anti-ADORA2Aantibody). In some embodiments, the immune checkpoint modulator is aADORA2A-binding protein (e.g., an antibody). In some embodiments, thecheckpoint modulator is an ADORA2A agonist. In some embodiments, thecheckpoint modulator is an ADORA2A antagonist. ADORA2A-binding proteins(e.g., antibodies) are known in the art and are disclosed, e.g., in U.S.Patent Application Publication No. 2014/0322236, which is incorporatedby reference herein.

B7-H3. B7-H3 (also known as CD276) belongs to the B7 superfamily, agroup of molecules that costimulate or down-modulate T-cell responses.B7-H3 potently and consistently down-modulates human T-cell responses(see, e.g., Leitner et al. (2009) Eur. J. Immunol. 39(7): 1754-64).Multiple immune checkpoint modulators specific for B7-H3 have beendeveloped and may be used as disclosed herein. In some embodiments, theimmune checkpoint modulator is an agent that modulates the activityand/or expression of B7-H3. In some embodiments, the immune checkpointmodulator is an agent that binds to B7-H3 (e.g., an anti-B7-H3antibody). In some embodiments, the checkpoint modulator is an B7-H3agonist. In some embodiments, the checkpoint modulator is an B7-H3antagonist. In some embodiments, the immune checkpoint modulator is ananti-B7-H3-binding protein selected from the group consisting of DS-5573(Daiichi Sankyo, Inc.), enoblituzumab (MacroGenics, Inc.), and 8H9(Sloan Kettering Institute for Cancer Research; see, e.g., Ahmed et al.(2015) J. Biol. Chem. 290(50): 30018-29). In some embodiments, theimmune checkpoint modulator is a B7-H3-binding protein (e.g., anantibody). B7-H3-binding proteins (e.g., antibodies) are known in theart and are disclosed, e.g., in U.S. Pat. Nos. 9,371,395, 9,150,656,9,062,110, 8,802,091, 8,501,471, 8,414,892; U.S. Patent ApplicationPublication Nos. 2015/0352224, 2015/0297748, 2015/0259434, 2015/0274838,2014/032875, 2014/0161814, 2013/0287798, 2013/0078234, 2013/0149236,2012/02947960, 2010/0143245, 2002/0102264; PCT Publication Nos. WO2016/106004, WO 2016/033225, WO 2015/181267, WO 2014/057687, WO2012/147713, WO 2011/109400, WO 2008/116219, WO 2003/075846, WO2002/032375; and Shi et al. (2016) Mol. Med. Rep. 14(1): 943-8, each ofwhich is incorporated by reference herein.

B7-H4. B7-H4 (also known as O8E, OV064, and V-set domain-containingT-cell activation inhibitor (VTCN1)), belongs to the B7 superfamily. Byarresting cell cycle, B7-H4 ligation of T cells has a profoundinhibitory effect on the growth, cytokine secretion, and development ofcytotoxicity. Administration of B7-H4Ig into mice impairsantigen-specific T cell responses, whereas blockade of endogenous B7-H4by specific monoclonal antibody promotes T cell responses (see, e.g.,Sica et al. (2003) Immunity 18(6): 849-61). Multiple immune checkpointmodulators specific for B7-H4 have been developed and may be used asdisclosed herein. In some embodiments, the immune checkpoint modulatoris an agent that modulates the activity and/or expression of B7-H4. Insome embodiments, the immune checkpoint modulator is an agent that bindsto B7-H4 (e.g., an anti-B7-H4 antibody). In some embodiments, the immunecheckpoint modulator is a B7-H4-binding protein (e.g., an antibody). Insome embodiments, the checkpoint modulator is an B7-H4 agonist. In someembodiments, the checkpoint modulator is an B7-H4 antagonist.B7-H4-binding proteins (e.g., antibodies) are known in the art and aredisclosed, e.g., in U.S. Pat. Nos. 9,296,822, 8,609,816, 8,759,490,8,323,645; U.S. Patent Application Publication Nos. 2016/0159910,2016/0017040, 2016/0168249, 2015/0315275, 2014/0134180, 2014/0322129,2014/0356364, 2014/0328751, 2014/0294861, 2014/0308259, 2013/0058864,2011/0085970, 2009/0074660, 2009/0208489; and PCT Publication Nos. WO2016/040724, WO 2016/070001, WO 2014/159835, WO 2014/100483, WO2014/100439, WO 2013/067492, WO 2013/025779, WO 2009/073533, WO2007/067991, and WO 2006/104677, each of which is incorporated byreference herein.

BTLA. B and T Lymphocyte Attenuator (BTLA), also known as CD272, hasHVEM (Herpesvirus Entry Mediator) as its ligand. Surface expression ofBTLA is gradually downregulated during differentiation of human CD8⁺ Tcells from the naive to effector cell phenotype, however tumor-specifichuman CD8⁺ T cells express high levels of BTLA (see, e.g., Derre et al.(2010) J. Clin. Invest. 120 (1): 157-67). Multiple immune checkpointmodulators specific for BTLA have been developed and may be used asdisclosed herein. In some embodiments, the immune checkpoint modulatoris an agent that modulates the activity and/or expression of BTLA. Insome embodiments, the immune checkpoint modulator is an agent that bindsto BTLA (e.g., an anti-BTLA antibody). In some embodiments, the immunecheckpoint modulator is a BTLA-binding protein (e.g., an antibody). Insome embodiments, the checkpoint modulator is an BTLA agonist. In someembodiments, the checkpoint modulator is an BTLA antagonist.BTLA-binding proteins (e.g., antibodies) are known in the art and aredisclosed, e.g., in U.S. Pat. Nos. 9,346,882, 8,580,259, 8,563,694,8,247,537; U.S. Patent Application Publication Nos. 2014/0017255,2012/0288500, 2012/0183565, 2010/0172900; and PCT Publication Nos. WO2011/014438, and WO 2008/076560, each of which is incorporated byreference herein.

CTLA-4. Cytotoxic T lymphocyte antigen-4 (CTLA-4) is a member of theimmune regulatory CD28-B7 immunoglobulin superfamily and acts on naïveand resting T lymphocytes to promote immunosuppression through bothB7-dependent and B7-independent pathways (see, e.g., Kim et al. (2016)J. Immunol. Res., Article ID 4683607, 14 pp.). CTLA-4 is also known ascalled CD152. CTLA-4 modulates the threshold for T cell activation. See,e.g., Gajewski et al. (2001) J. Immunol. 166(6): 3900-7. Multiple immunecheckpoint modulators specific for CTLA-4 have been developed and may beused as disclosed herein.

In some embodiments, the immune checkpoint modulator is an agent thatmodulates the activity and/or expression of CTLA-4. In some embodiments,the immune checkpoint modulator is an agent that binds to CTLA-4 (e.g.,an anti-CTLA-4 antibody). In some embodiments, the checkpoint modulatoris an CTLA-4 agonist. In some embodiments, the checkpoint modulator isan CTLA-4 antagonist. In some embodiments, the immune checkpointmodulator is a CTLA-4-binding protein (e.g., an antibody) selected fromthe group consisting of ipilimumab (Yervoy; Medarex/Bristol-MyersSquibb), tremelimumab (formerly ticilimumab; Pfizer/AstraZeneca),JMW-3B3 (University of Aberdeen), and AGEN1884 (Agenus). AdditionalCTLA-4 binding proteins (e.g., antibodies) are known in the art and aredisclosed, e.g., in U.S. Pat. No. 8,697,845; U.S. Patent ApplicationPublication Nos. 2014/0105914, 2013/0267688, 2012/0107320, 2009/0123477;and PCT Publication Nos. WO 2014/207064, WO 2012/120125, WO 2016/015675,WO 2010/097597, WO 2006/066568, and WO 2001/054732, each of which isincorporated by reference herein.

IDO. Indoleamine 2,3-dioxygenase (IDO) is a tryptophan catabolic enzymewith immune-inhibitory properties. Another important molecule is TDO,tryptophan 2,3-dioxygenase. IDO is known to suppress T and NK cells,generate and activate Tregs and myeloid-derived suppressor cells, andpromote tumor angiogenesis. Prendergast et al., 2014, Cancer ImmunolImmunother. 63 (7): 721-35, which is incorporated by reference herein.

Multiple immune checkpoint modulators specific for IDO have beendeveloped and may be used as disclosed herein. In some embodiments, theimmune checkpoint modulator is an agent that modulates the activityand/or expression of IDO. In some embodiments, the immune checkpointmodulator is an agent that binds to IDO (e.g., an IDO binding protein,such as an anti-IDO antibody). In some embodiments, the checkpointmodulator is an IDO agonist. In some embodiments, the checkpointmodulator is an IDO antagonist. In some embodiments, the immunecheckpoint modulator is selected from the group consisting ofNorharmane, Rosmarinic acid, COX-2 inhibitors, alpha-methyl-tryptophan,and Epacadostat. In one embodiment, the modulator is Epacadostat.

KIR. Killer immunoglobulin-like receptors (KIRs) comprise a diverserepertoire of MHCI binding molecules that negatively regulate naturalkiller (NK) cell function to protect cells from NK-mediated cell lysis.KIRs are generally expressed on NK cells but have also been detected ontumor specific CTLs. Multiple immune checkpoint modulators specific forKIR have been developed and may be used as disclosed herein. In someembodiments, the immune checkpoint modulator is an agent that modulatesthe activity and/or expression of KIR. In some embodiments, the immunecheckpoint modulator is an agent that binds to KIR (e.g., an anti-KIRantibody). In some embodiments, the immune checkpoint modulator is aKIR-binding protein (e.g., an antibody). In some embodiments, thecheckpoint modulator is an KIR agonist. In some embodiments, thecheckpoint modulator is an KR antagonist. In some embodiments the immunecheckpoint modulator is lirilumab (also known as BMS-986015;Bristol-Myers Squibb). Additional KTR binding proteins (e.g.,antibodies) are known in the art and are disclosed, e.g., in U.S. Pat.Nos. 8,981,065, 9,018,366, 9,067,997, 8,709,411, 8,637,258, 8,614,307,8,551,483, 8,388,970, 8,119,775; U.S. Patent Application PublicationNos. 2015/0344576, 2015/0376275, 2016/0046712, 2015/0191547,2015/0290316, 2015/0283234, 2015/0197569, 2014/0193430, 2013/0143269,2013/0287770, 2012/0208237, 2011/0293627, 2009/0081240, 2010/0189723;and PCT Publication Nos.

WO 2016/069589, WO 2015/069785, WO 2014/066532, WO 2014/055648, WO2012/160448, WO 2012/071411, WO 2010/065939, WO 2008/084106, WO2006/072625, WO 2006/072626, and WO 2006/003179, each of which isincorporated by reference herein.

LAG-3, Lymphocyte-activation gene 3 (LAG-3, also known as CD223) is aCD4-related transmembrane protein that competitively binds MHC II andacts as a co-inhibitory checkpoint for T cell activation (see, e.g.,Goldberg and Drake (2011) Curr. Top. Microbiol. Immunol. 344: 269-78).Multiple immune checkpoint modulators specific for LAG-3 have beendeveloped and may be used as disclosed herein. In some embodiments, theimmune checkpoint modulator is an agent that modulates the activityand/or expression of LAG-3. In some embodiments, the immune checkpointmodulator is an agent that binds to LAG-3 (e.g., an anti-PD-1 antibody).In some embodiments, the checkpoint modulator is an LAG-3 agonist. Insome embodiments, the checkpoint modulator is an LAG-3 antagonist. Insome embodiments, the immune checkpoint modulator is a LAG-3-bindingprotein (e.g., an antibody) selected from the group consisting ofpembrolizumab (Keytruda; formerly lambrolizumab; Merck & Co., Inc.),nivolumab (Opdivo; Bristol-Myers Squibb), pidilizumab (CT-011,CureTech), SHR-1210 (Incyte/Jiangsu Hengrui Medicine Co., Ltd.),MEDI0680 (also known as AMP-514; Amplimmune Inc./Medimmune), PDR001(Novartis), BGB-A317 (BeiGene Ltd.), TSR-042 (also known as ANB011;AnaptysBio/Tesaro, Inc.), REGN2810 (Regeneron Pharmaceuticals,Inc./Sanofi-Aventis), and PF-06801591 (Pfizer). Additional PD-1-bindingproteins (e.g., antibodies) are known in the art and are disclosed,e.g., in U.S. Pat. Nos. 9,181,342, 8,927,697, 7,488,802, 7,029,674; U.S.Patent Application Publication Nos. 2015/0152180, 2011/0171215,2011/0171220; and PCT Publication Nos. WO 2004/056875, WO 2015/036394,WO 2010/029435, WO 2010/029434, WO 2014/194302, each of which isincorporated by reference herein.

PD-1. Programmed cell death protein 1 (PD-1, also known as CD279 andPDCD1) is an inhibitory receptor that negatively regulates the immunesystem. In contrast to CTLA-4 which mainly affects naïve T cells, PD-1is more broadly expressed on immune cells and regulates mature T cellactivity in peripheral tissues and in the tumor microenvironment. PD-1inhibits T cell responses by interfering with T cell receptor signaling.PD-1 has two ligands, PD-L1 and PD-L2. Multiple immune checkpointmodulators specific for PD-1 have been developed and may be used asdisclosed herein. In some embodiments, the immune checkpoint modulatoris an agent that modulates the activity and/or expression of PD-1. Insome embodiments, the immune checkpoint modulator is an agent that bindsto PD-1 (e.g., an anti-PD-1 antibody). In some embodiments, thecheckpoint modulator is an PD-1 agonist. In some embodiments, thecheckpoint modulator is an PD-1 antagonist. In some embodiments, theimmune checkpoint modulator is a PD-1-binding protein (e.g., anantibody) selected from the group consisting of pembrolizumab (Keytruda;formerly lambrolizumab; Merck & Co., Inc.), nivolumab (Opdivo;Bristol-Myers Squibb), pidilizumab (CT-011, CureTech), SHR-1210(Incyte/Jiangsu Hengrui Medicine Co., Ltd.), MEDI0680 (also known asAMP-514; Amplimmune Inc./Medimmune), PDR001 (Novartis), BGB-A317(BeiGene Ltd.), TSR-042 (also known as ANB011; AnaptysBio/Tesaro, Inc.),REGN2810 (Regeneron Pharmaceuticals, Inc./Sanofi-Aventis), andPF-06801591 (Pfizer). Additional PD-1-binding proteins (e.g.,antibodies) are known in the art and are disclosed, e.g., in U.S. Pat.Nos. 9,181,342, 8,927,697, 7,488,802, 7,029,674; U.S. Patent ApplicationPublication Nos. 2015/0152180, 2011/0171215, 2011/0171220; and PCTPublication Nos. WO 2004/056875, WO 2015/036394, WO 2010/029435, WO2010/029434, WO 2014/194302, each of which is incorporated by referenceherein.

PD-L1/PD-L2. PD ligand 1 (PD-L1, also knows as B7-H1) and PD ligand 2(PD-L2, also known as PDCDILG2, CD273, and B7-DC) bind to the PD-1receptor. Both ligands belong to the same B7 family as the B7-1 and B7-2proteins that interact with CD28 and CTLA-4. PD-L1 can be expressed onmany cell types including, for example, epithelial cells, endothelialcells, and immune cells. Ligation of PDL-1 decreases IFNγ, TNFα, andIL-2 production and stimulates production of ILIO, an anti-inflammatorycytokine associated with decreased T cell reactivity and proliferationas well as antigen-specific T cell anergy. PDL-2 is predominantlyexpressed on antigen presenting cells (APCs). PDL2 ligation also resultsin T cell suppression, but where PDL-1-PD-1 interactions inhibitsproliferation via cell cycle arrest in the G1/G2 phase, PDL2-PD-1engagement has been shown to inhibit TCR-mediated signaling by blockingB7:CD28 signals at low antigen concentrations and reducing cytokineproduction at high antigen concentrations. Multiple immune checkpointmodulators specific for PD-L1 and PD-L2 have been developed and may beused as disclosed herein.

In some embodiments, the immune checkpoint modulator is an agent thatmodulates the activity and/or expression of PD-L1. In some embodiments,the immune checkpoint modulator is an agent that binds to PD-L1 (e.g.,an anti-PD-L1 antibody). In some embodiments, the checkpoint modulatoris an PD-L1 agonist. In some embodiments, the checkpoint modulator is anPD-L1 antagonist. In some embodiments, the immune checkpoint modulatoris a PD-L1-binding protein (e.g., an antibody or a Fc-fusion protein)selected from the group consisting of durvalumab (also known asMEDI-4736; AstraZeneca/Celgene Corp./Medimmune), atezolizumab(Tecentriq; also known as MPDL3280A and RG7446; Genetech Inc.), avelumab(also known as MSB0010718C; Merck Serono/AstraZeneca); MDX-1105(Medarex/Bristol-Meyers Squibb), AMP-224 (Amplimmune, GlaxoSmithKline),LY3300054 (Eli Lilly and Co.). Additional PD-L1-binding proteins areknown in the art and are disclosed, e.g., in U.S. Patent ApplicationPublication Nos. 2016/0084839, 2015/0355184, 2016/0175397, and PCTPublication Nos. WO 2014/100079, WO 2016/030350, WO2013181634, each ofwhich is incorporated by reference herein.

In some embodiments, the immune checkpoint modulator is an agent thatmodulates the activity and/or expression of PD-L2. In some embodiments,the immune checkpoint modulator is an agent that binds to PD-L2 (e.g.,an anti-PD-L2 antibody). In some embodiments, the checkpoint modulatoris an PD-L2 agonist. In some embodiments, the checkpoint modulator is anPD-L2 antagonist. PD-L2-binding proteins (e.g., antibodies) are known inthe art and are disclosed, e.g., in U.S. Pat. Nos. 9,255,147, 8,188,238;U.S. Patent Application Publication Nos. 2016/0122431, 2013/0243752,2010/0278816, 2016/0137731, 2015/0197571, 2013/0291136, 2011/0271358;and PCT Publication Nos. WO 2014/022758, and WO 2010/036959, each ofwhich is incorporated by reference herein.

TIM-3. T cell immunoglobulin mucin 3 (TIM-3, also known as Hepatitis Avirus cellular receptor (HAVCR2)) is a A type I glycoprotein receptorthat binds to S-type lectin galectin-9 (Gal-9). TIM-3, is a widelyexpressed ligand on lymphocytes, liver, small intestine, thymus, kidney,spleen, lung, muscle, reticulocytes, and brain tissue. Tim-3 wasoriginally identified as being selectively expressed on IFN-γ-secretingTh1 and Tc1 cells (Monney et al. (2002)Nature 415: 536-41). Binding ofGal-9 by the TIM-3 receptor triggers downstream signaling to negativelyregulate T cell survival and function. Multiple immune checkpointmodulators specific for TIM-3 have been developed and may be used asdisclosed herein. In some embodiments, the immune checkpoint modulatoris an agent that modulates the activity and/or expression of TIM-3. Insome embodiments, the immune checkpoint modulator is an agent that bindsto TIM-3 (e.g., an anti-TIM-3 antibody). In some embodiments, thecheckpoint modulator is an TIM-3 agonist. In some embodiments, thecheckpoint modulator is an TIM-3 antagonist. In some embodiments, theimmune checkpoint modulator is an anti-TIM-3 antibody selected from thegroup consisting of TSR-022 (AnaptysBio/Tesaro, Inc.) and MGB453(Novartis). Additional TIM-3 binding proteins (e.g., antibodies) areknown in the art and are disclosed, e.g., in U.S. Pat. Nos. 9,103,832,8,552,156, 8,647,623, 8,841,418; U.S. Patent Application PublicationNos. 2016/0200815, 2015/0284468, 2014/0134639, 2014/0044728,2012/0189617, 2015/0086574, 2013/0022623; and PCT Publication Nos. WO2016/068802, WO 2016/068803, WO 2016/071448, WO 2011/155607, and WO2013/006490, each of which is incorporated by reference herein.

VISTA. V-domain Ig suppressor of T cell activation (VISTA, also known asPlatelet receptor Gi24) is an Ig super-family ligand that negativelyregulates T cell responses. See, e.g., Wang et al., 2011, J. Exp. Med.208: 577-92. VISTA expressed on APCs directly suppresses CD4⁺ and CD8+ Tcell proliferation and cytokine production (Wang et al. (2010) J ExpMed. 208(3): 577-92). Multiple immune checkpoint modulators specific forVISTA have been developed and may be used as disclosed herein. In someembodiments, the immune checkpoint modulator is an agent that modulatesthe activity and/or expression of VISTA. In some embodiments, the immunecheckpoint modulator is an agent that binds to VISTA (e.g., ananti-VISTA antibody). In some embodiments, the checkpoint modulator isan VISTA agonist. In some embodiments, the checkpoint modulator is anVISTA antagonist. In some embodiments, the immune checkpoint modulatoris a VISTA-binding protein (e.g., an antibody) selected from the groupconsisting of TSR-022 (AnaptysBio/Tesaro, Inc.) and MGB453 (Novartis).VISTA-binding proteins (e.g., antibodies) are known in the art and aredisclosed, e.g., in U.S. Patent Application Publication Nos.2016/0096891, 2016/0096891; and PCT Publication Nos. WO 2014/190356, WO2014/197849, WO 2014/190356 and WO 2016/094837, each of which isincorporated by reference herein.

Methods are provided for the treatment of oncological disorders byadministering a composition comprising one or more postcellularsignaling factors produced by cells exposed to a stress condition, incombination with at least one immune checkpoint modulator to a subject.In certain embodiments, the immune checkpoint modulator stimulates theimmune response of the subject. For example, in some embodiments, theimmune checkpoint modulator stimulates or increases the expression oractivity of a stimulatory immune checkpoint (e.g. CD27, CD28, CD40,CD122, OX40, GITR, ICOS, or 4-1BB). In some embodiments, the immunecheckpoint modulator inhibits or decreases the expression or activity ofan inhibitory immune checkpoint (e.g. A2A4, B7-H3, B7-H4, BTLA, CTLA-4,IDO, KIR, LAG3, PD-1, PD-L1, PD-L2, TIM-3 or VISTA).

In certain embodiments the immune checkpoint modulator targets an immunecheckpoint molecule selected from the group consisting of CD27, CD28,CD40, CD122, OX40, GITR, ICOS, 4-1BB, A2A4, B7-H3, B7-H4, BTLA, CTLA-4,IDO, KIR, LAG3, PD-1, PD-L1, PD-L2, TIM-3 and VISTA. In certainembodiments the immune checkpoint modulator targets an immune checkpointmolecule selected from the group consisting of CD27, CD28, CD40, CD122,OX40, GITR, ICOS, 4-1BB, A2A4, B7-H3, B7-H4, BTLA, IDO, KIR, LAG3, PD-1,PD-L1, PD-L2, TIM-3 and VISTA. In a particular embodiment, the immunecheckpoint modulator targets an immune checkpoint molecule selected fromthe group consisting of CTLA-4, PD-L1 and PD-1. In a further particularembodiment the immune checkpoint modulator targets an immune checkpointmolecule selected from PD-L1 and PD-1.

In some embodiments, more than one (e.g. 2, 3, 4, 5 or more) immunecheckpoint modulator is administered to the subject. Where more than oneimmune checkpoint modulator is administered, the modulators may eachtarget a stimulatory immune checkpoint molecule, or each target aninhibitory immune checkpoint molecule. In other embodiments, the immunecheckpoint modulators include at least one modulator targeting astimulatory immune checkpoint and at least one immune checkpointmodulator targeting an inhibitory immune checkpoint molecule. In certainembodiments, the immune checkpoint modulator is a binding protein, forexample, an antibody. The term “binding protein”, as used herein, refersto a protein or polypeptide that can specifically bind to a targetmolecule, e.g. an immune checkpoint molecule. In some embodiments thebinding protein is an antibody or antigen binding portion thereof, andthe target molecule is an immune checkpoint molecule. In someembodiments the binding protein is a protein or polypeptide thatspecifically binds to a target molecule (e.g., an immune checkpointmolecule). In some embodiments the binding protein is a ligand. In someembodiments, the binding protein is a fusion protein. In someembodiments, the binding protein is a receptor. Examples of bindingproteins that may be used in the methods of the invention include, butare not limited to, a humanized antibody, an antibody Fab fragment, adivalent antibody, an antibody drug conjugate, a scFv, a fusion protein,a bivalent antibody, and a tetravalent antibody.

The term “antibody”, as used herein, refers to any immunoglobulin (Ig)molecule comprised of four polypeptide chains, two heavy (H) chains andtwo light (L) chains, or any functional fragment, mutant, variant, orderivation thereof. Such mutant, variant, or derivative antibody formatsare known in the art. In a full-length antibody, each heavy chain iscomprised of a heavy chain variable region (abbreviated herein as HCVRor VH) and a heavy chain constant region. The heavy chain constantregion is comprised of three domains, CH1, CH2 and CH3. Each light chainis comprised of a light chain variable region (abbreviated herein asLCVR or VL) and a light chain constant region. The light chain constantregion is comprised of one domain, CL. The VH and VL regions can befurther subdivided into regions of hypervariability, termedcomplementarity determining regions (CDR), interspersed with regionsthat are more conserved, termed framework regions (FR). Each VH and VLis composed of three CDRs and four FRs, arranged from amino-terminus tocarboxy-terminus in the following order: FR1, CDR1, FR2, CDR2, FR3,CDR3, FR4. Immunoglobulin molecules can be of any type (e.g., IgG, IgE,IgM, IgD, IgA and IgY), class (e.g., IgG 1, IgG2, IgG 3, IgG4, IgA1 andIgA2) or subclass. In some embodiments, the antibody is a fill-lengthantibody. In some embodiments, the antibody is a murine antibody. Insome embodiments, the antibody is a human antibody. In some embodiments,the antibody is a humanized antibody. In other embodiments, the antibodyis a chimeric antibody. Chimeric and humanized antibodies may beprepared by methods well known to those of skill in the art includingCDR grafting approaches (see, e.g., U.S. Pat. Nos. 5,843,708; 6,180,370;5,693,762; 5,585,089; and 5,530,101), chain shuffling strategies (see,e.g., U.S. Pat. No. 5,565,332; Rader et al. (1998) PROC. NAT'L. ACAD.SCI. USA 95: 8910-8915), molecular modeling strategies (U.S. Pat. No.5,639,641), and the like.

The term “antigen-binding portion” of an antibody (or simply “antibodyportion”), as used herein, refers to one or more fragments of anantibody that retain the ability to specifically bind to an antigen. Ithas been shown that the antigen-binding function of an antibody can beperformed by fragments of a full-length antibody. Such antibodyembodiments may also be bispecific, dual specific, or multi-specificformats; specifically binding to two or more different antigens.Examples of binding fragments encompassed within the term“antigen-binding portion” of an antibody include (i) a Fab fragment, amonovalent fragment consisting of the VL, VH, CL and CH1 domains; (ii) aF(ab′)2 fragment, a bivalent fragment comprising two Fab fragmentslinked by a disulfide bridge at the hinge region; (iii) a Fd fragmentconsisting of the VH and CH1 domains; (iv) a Fv fragment consisting ofthe VL and VH domains of a single arm of an antibody, (v) a dAb fragment(Ward et al. (1989) NATURE 341: 544-546; and WO 90/05144 A¹, thecontents of which are herein incorporated by reference), which comprisesa single variable domain; and (vi) an isolated complementaritydetermining region (CDR). Furthermore, although the two domains of theFv fragment, VL and VH, are coded for by separate genes, they can bejoined, using recombinant methods, by a synthetic linker that enablesthem to be made as a single protein chain in which the VL and VH regionspair to form monovalent molecules (known as single chain Fv (scFv); see,e.g., Bird et al. (1988) SCIENCE 242:423-426; and Huston et al. (1988)PROC. NAT'L. ACAD. SCI. USA 85:5879-5883). Such single chain antibodiesare also intended to be encompassed within the term “antigen-bindingportion” of an antibody. Other forms of single chain antibodies, such asdiabodies are also encompassed. Antigen binding portions can also beincorporated into single domain antibodies, maxibodies, minibodies,nanobodies, intrabodies, diabodies, triabodies, tetrabodies, v-NAR andbis-scFv (see, e.g., Hollinger and Hudson, Nature Biotechnology23:1126-1136, 2005).

As used herein, the term “CDR” refers to the complementarity determiningregion within antibody variable sequences. There are three CDRs in eachof the variable regions of the heavy chain and the light chain, whichare designated CDR1, CDR2 and CDR3, for each of the variable regions.The term “CDR set” as used herein refers to a group of three CDRs thatoccur in a single variable region capable of binding the antigen. Theexact boundaries of these CDRs have been defined differently accordingto different systems. The system described by Kabat (Kabat et al.,SEQUENCES OF PROTEINS OF IMMUNOLOGICAL INTEREST (National Institutes ofHealth, Bethesda, Md. (1987) and (1991)) not only provides anunambiguous residue numbering system applicable to any variable regionof an antibody, but also provides precise residue boundaries definingthe three CDRs. These CDRs may be referred to as Kabat CDRs. Chothia andcoworkers found that certain sub-portions within Kabat CDRs adopt nearlyidentical peptide backbone conformations, despite having great diversityat the level of amino acid sequence (Chothia et al. (1987) J. MOL. BIOL.196: 901-917, and Chothia et al. (1989) NATURE 342: 877-883). Thesesub-portions were designated as L1, L2 and L3 or H1, H2 and H3 where the“L” and the “H” designates the light chain and the heavy chains regions,respectively. These regions may be referred to as Chothia CDRs, whichhave boundaries that overlap with Kabat CDRs. Other boundaries definingCDRs overlapping with the Kabat CDRs have been described by Padlan etal. (1995) FASEB J. 9: 133-139, and MacCallum et al. (1996) J. MOL.BIOL. 262(5): 732-45. Still other CDR boundary definitions may notstrictly follow one of the above systems, but will nonetheless overlapwith the Kabat CDRs, although they may be shortened or lengthened inlight of prediction or experimental findings that particular residues orgroups of residues or even entire CDRs do not significantly impactantigen binding. The methods used herein may utilize CDRs definedaccording to any of these systems, although preferred embodiments useKabat or Chothia defined CDRs.

The term “humanized antibody”, as used herein refers to non-human (e.g.,murine) antibodies that are chimeric immunoglobulins, immunoglobulinchains, or fragments thereof (such as Fv, Fab, Fab′, F(ab′)2 or otherantigen-binding subsequences of antibodies) which contain minimalsequence derived from a non-human immunoglobulin. For the most part,humanized antibodies and antibody fragments thereof are humanimmunoglobulins (recipient antibody or antibody fragment) in whichresidues from a complementary-determining region (CDR) of the recipientare replaced by residues from a CDR of a non-human species (donorantibody) such as mouse, rat or rabbit having the desired specificity,affinity, and capacity. In some instances, Fv framework region (FR)residues of the human immunoglobulin are replaced by correspondingnon-human residues. Furthermore, a humanized antibody/antibody fragmentcan comprise residues which are found neither in the recipient antibodynor in the imported CDR or framework sequences. These modifications canfurther refine and optimize antibody or antibody fragment performance.In general, the humanized antibody or antibody fragment thereof willcomprise substantially all of at least one, and typically two, variabledomains, in which all or substantially all of the CDR regions correspondto those of a non-human immunoglobulin and all or a significant portionof the FR regions are those of a human immunoglobulin sequence. Thehumanized antibody or antibody fragment can also comprise at least aportion of an immunoglobulin constant region (Fc), typically that of ahuman immunoglobulin. For further details, see Jones et al. (1986)NATURE 321: 522-525; Reichmann et al. (1988) NATURE 332: 323-329; andPresta (1992) CURR. OP. STRUCT. BIOL. 2: 593-596, each of which isincorporated by reference herein in its entirety.

The term “immunoconjugate” or “antibody drug conjugate” as used hereinrefers to the linkage of an antibody or an antigen binding fragmentthereof with another agent, such as a chemotherapeutic agent, a toxin,an immunotherapeutic agent, an imaging probe, and the like. The linkagecan be covalent bonds, or non-covalent interactions such as throughelectrostatic forces. Various linkers, known in the art, can be employedin order to form the immunoconjugate. Additionally, the immunoconjugatecan be provided in the form of a fusion protein that may be expressedfrom a polynucleotide encoding the immunoconjugate. As used herein,“fusion protein” refers to proteins created through the joining of twoor more genes or gene fragments which originally coded for separateproteins (including peptides and polypeptides). Translation of thefusion gene results in a single protein with functional propertiesderived from each of the original proteins.

A “bivalent antibody” refers to an antibody or antigen-binding fragmentthereof that comprises two antigen-binding sites. The two antigenbinding sites may bind to the same antigen, or they may each bind to adifferent antigen, in which case the antibody or antigen-bindingfragment is characterized as “bispecific.” A “tetravalent antibody”refers to an antibody or antigen-binding fragment thereof that comprisesfour antigen-binding sites. In certain embodiments, the tetravalentantibody is bispecific. In certain embodiments, the tetravalent antibodyis multispecific, i.e. binding to more than two different antigens.

Fab (fragment antigen binding) antibody fragments are immunoreactivepolypeptides comprising monovalent antigen-binding domains of anantibody composed of a polypeptide consisting of a heavy chain variableregion (V_(H)) and heavy chain constant region 1 (C_(H1)) portion and apoly peptide consisting of a light chain variable (V_(L)) and lightchain constant (C_(L)) portion, in which the C_(L) and C_(H1) portionsare bound together, preferably by a disulfide bond between Cys residues.

Immune checkpoint modulator antibodies include, but are not limited to,at least 4 major categories: i) antibodies that block an inhibitorypathway directly on T cells or natural killer (NK) cells (e.g., PD-1targeting antibodies such as nivolumab and pembrolizumab, antibodiestargeting TIM-3, and antibodies targeting LAG-3, 2B4, CD160, A2aR, BTLA,CGEN-15049, and KIR), ii) antibodies that activate stimulatory pathwaysdirectly on T cells or NK cells (e.g., antibodies targeting OX40, GITR,and 4-1BB), iii) antibodies that block a suppressive pathway on immunecells or relies on antibody-dependent cellular cytotoxicity to depletesuppressive populations of immune cells (e.g., CTLA-4 targetingantibodies such as ipilimumab, antibodies targeting VISTA, andantibodies targeting PD-L2, Gr1, and Ly6G), and iv) antibodies thatblock a suppressive pathway directly on cancer cells or that rely onantibody-dependent cellular cytotoxicity to enhance cytotoxicity tocancer cells (e.g., rituximab, antibodies targeting PD-L1, andantibodies targeting B7-H3, B7-H4, Gal-9, and MUC1). Examples ofcheckpoint inhibitors include, e.g., an inhibitor of CTLA-4, such asipilimumab or tremelimumab; an inhibitor of the PD-1 pathway such as ananti-PD-1, anti-PD-L1 or anti-PD-L2 antibody. Exemplary anti-PD-1antibodies are described in WO 2006/121168, WO 2008/156712, WO2012/145493, WO 2009/014708 and WO 2009/114335. Exemplary anti-PD-L1antibodies are described in WO 2007/005874, WO 2010/077634 and WO2011/066389, and exemplary anti-PD-L2 antibodies are described in WO2004/007679.

In a particular embodiment, the immune checkpoint modulator is a fusionprotein, for example, a fusion protein that modulates the activity of animmune checkpoint modulator.

In one embodiment, the immune checkpoint modulator is a therapeuticnucleic acid molecule, for example a nucleic acid that modulates theexpression of an immune checkpoint protein or mRNA. Nucleic acidtherapeutics are well known in the art. Nucleic acid therapeuticsinclude both single stranded and double stranded (i.e., nucleic acidtherapeutics having a complementary region of at least 15 nucleotides inlength) nucleic acids that are complementary to a target sequence in acell. In certain embodiments, the nucleic acid therapeutic is targetedagainst a nucleic acid sequence encoding an immune checkpoint protein.

Antisense nucleic acid therapeutic agents are single stranded nucleicacid therapeutics, typically about 16 to 30 nucleotides in length, andare complementary to a target nucleic acid sequence in the target cell,either in culture or in an organism.

In another aspect, the agent is a single-stranded antisense RNAmolecule. An antisense RNA molecule is complementary to a sequencewithin the target mRNA. Antisense RNA can inhibit translation in astoichiometric manner by base pairing to the mRNA and physicallyobstructing the translation machinery, see Dias, N. et al., (2002) MolCancer Ther 1:347-355. The antisense RNA molecule may have about 15-30nucleotides that are complementary to the target mRNA. Patents directedto antisense nucleic acids, chemical modifications, and therapeutic usesinclude, for example: U.S. Pat. No. 5,898,031 related to chemicallymodified RNA-containing therapeutic compounds; U.S. Pat. No. 6,107,094related methods of using these compounds as therapeutic agents; U.S.Pat. No. 7,432,250 related to methods of treating patients byadministering single-stranded chemically modified RNA-like compounds;and U.S. Pat. No. 7,432,249 related to pharmaceutical compositionscontaining single-stranded chemically modified RNA-like compounds. U.S.Pat. No. 7,629,321 is related to methods of cleaving target mRNA using asingle-stranded oligonucleotide having a plurality of RNA nucleosidesand at least one chemical modification. The entire contents of each ofthe patents listed in this paragraph are incorporated herein byreference.

Nucleic acid therapeutic agents for use in the methods of the inventionalso include double stranded nucleic acid therapeutics. An “RNAi agent,”“double stranded RNAi agent,” double-stranded RNA (dsRNA) molecule, alsoreferred to as “dsRNA agent,” “dsRNA”, “siRNA”, “iRNA agent,” as usedinterchangeably herein, refers to a complex of ribonucleic acidmolecules, having a duplex structure comprising two anti-parallel andsubstantially complementary, as defined below, nucleic acid strands. Asused herein, an RNAi agent can also include dsiRNA (see, e.g., US Patentpublication 20070104688, incorporated herein by reference). In general,the majority of nucleotides of each strand are ribonucleotides, but asdescribed herein, each or both strands can also include one or morenon-ribonucleotides, e.g., a deoxyribonucleotide and/or a modifiednucleotide. In addition, as used in this specification, an “RNAi agent”may include ribonucleotides with chemical modifications; an RNAi agentmay include substantial modifications at multiple nucleotides. Suchmodifications may include all types of modifications disclosed herein orknown in the art. Any such modifications, as used in a siRNA typemolecule, are encompassed by “RNAi agent” for the purposes of thisspecification and claims. The RNAi agents that are used in the methodsof the invention include agents with chemical modifications asdisclosed, for example, in WO/2012/037254, and WO 2009/073809, theentire contents of each of which are incorporated herein by reference.

Immune checkpoint modulators may be administered at appropriate dosagesto treat the oncological disorder, for example, by using standarddosages. One skilled in the art would be able, by routineexperimentation, to determine what an effective, non-toxic amount of animmune checkpoint modulator would be for the purpose of treatingoncological disorders. Standard dosages of immune checkpoint modulatorsare known to a person skilled in the art and may be obtained, forexample, from the product insert provided by the manufacturer of theimmune checkpoint modulator. Examples of standard dosages of immunecheckpoint modulators are provided in Table 1 below. In otherembodiments, the immune checkpoint modulator is administered at a dosagethat is different (e.g. lower) than the standard dosages of the immunecheckpoint modulator used to treat the oncological disorder under thestandard of care for treatment for a particular oncological disorder.

TABLE 1 Exemplary Standard Dosages of Immune Checkpoint ModulatorsImmune Immune Checkpoint Checkpoint Molecule Modulator TargetedExemplary Standard Dosage Ipilimumab CTLA-4 3 mg/kg administeredintravenously (Yervoy ™) over 90 minutes every 3 weeks for a total of 4doses Pembrolizumab PD-1 2 mg/kg administered as an (Keytruda ™)intravenous infusion over 30 minutes every 3 weeks until diseaseprogression or unacceptable toxicity Atezolizumab PD-L1 1200 mgadministered as an (Tecentriq ™) intravenous infusion over 60 minutesevery 3 weeks

In certain embodiments, the administered dosage of the immune checkpointmodulator is 5%, 10%, 20%, 30%, 40%, 50%, 60%, 70%, 80%, or 90% lowerthan the standard dosage of the immune checkpoint modulator for aparticular oncological disorder. In certain embodiments, the dosageadministered of the immune checkpoint modulator is 95%, 90%, 85%, 80%,75%, 70%, 65%, 60%, 55%, 50%, 45%, 40%, 35%, 30%, 25%, 20%, 15%, 10% or5% of the standard dosage of the immune checkpoint modulator for aparticular oncological disorder. In one embodiment, where a combinationof immune checkpoint modulators are administered, at least one of theimmune checkpoint modulators is administered at a dose that is lowerthan the standard dosage of the immune checkpoint modulator for aparticular oncological disorder. In one embodiment, where a combinationof immune checkpoint modulators are administered, at least two of theimmune checkpoint modulators are administered at a dose that is lowerthan the standard dosage of the immune checkpoint modulators for aparticular oncological disorder. In one embodiment, where a combinationof immune checkpoint modulators are administered, at least three of theimmune checkpoint modulators are administered at a dose that is lowerthan the standard dosage of the immune checkpoint modulators for aparticular oncological disorder. In one embodiment, where a combinationof immune checkpoint modulators are administered, all of the immunecheckpoint modulators are administered at a dose that is lower than thestandard dosage of the immune checkpoint modulators for a particularoncological disorder.

In some embodiments, additional immunotherapeutics that may beadministered in combination with the composition comprising one or morepostcellular signaling factors include, but are not limited to,Toll-like receptor (TLR) agonists, cell-based therapies, cytokines andcancer vaccines.

In some embodiments, additional immunotherapeutics that may beadministered in combination with the STING agonist and the purinergicreceptor agonist include, but are not limited to, Toll-like receptor(TLR) agonists, cell-based therapies, cytokines and cancer vaccines.

2. TLR Avonists

TLRs are single membrane-spanning non-catalytic receptors that recognizestructurally conserved molecules derived from microbes. TLRs togetherwith the Interleukin-1 receptor form a receptor superfamily, known asthe “Interleukin-1 Receptor/Toll-Like Receptor Superfamily.” Members ofthis family are characterized structurally by an extracellularleucine-rich repeat (LRR) domain, a conserved pattern of juxtamembranecysteine residues, and an intracytoplasmic signaling domain that forms aplatform for downstream signaling by recruiting TIR domain-containingadapters including MyD88, TIR domain-containing adaptor (TRAP), and TIRdomain-containing adaptor inducing IFNβ (TRIF) (O'Neill et al., 2007,Nat Rev Immunol 7, 353).

The TLRs include TLR1, TLR2, TLR3, TLR4, TLR5, TLR6, TLR7, TLR8, TLR9,and TLR10. TLR2 mediates cellular responses to a large number ofmicrobial products including peptidoglycan, bacterial lipopeptides,lipoteichoic acid, mycobacterial lipoarabinomannan and yeast cell wallcomponents. TLR4 is a transmembrane protein which belongs to the patternrecognition receptor (PRR) family. Its activation leads to anintracellular signaling pathway NF-κB and inflammatory cytokineproduction which is responsible for activating the innate immune system.TLR5 is known to recognize bacterial flagellin from invading mobilebacteria, and has been shown to be involved in the onset of manydiseases, including inflammatory bowel disease.

TLR agonists are known in the art and are described, for example, inUS2014/0030294, which is incorporated by reference herein in itsentirety. Exemplary TLR2 agonists include mycobacterial cell wallglycolipids, lipoarabinomannan (LAM) and mannosylatedphosphatidylinositol (PIIM), MALP-2 and Pam3Cys and synthetic variantsthereof. Exemplary TLR4 agonists include lipopolysaccharide or syntheticvariants thereof (e.g., MPL and RC529) and lipid A or synthetic variantsthereof (e.g., aminoalkyl glucosaminide 4-phosphates). See, e.g., Cluffet al., 2005, Infection and Immunity, p. 3044-3052:73; Lembo et al.,2008, The Journal of Immunology 180, 7574-7581; and Evans et al., 2003,Expert Rev Vaccines 2:219-29. Exemplary TLR5 agonists include flagellinor synthetic variants thereof (e.g., A pharmacologically optimized TLR5agonist with reduced immunogenicity (such as CBLB502) made by deletingportions of flagellin that are non-essential for TLR5 activation).

Additional TLR agonists include Coley's toxin and BacilleCalmette-Guerin (BCG). Coley's toxin is a mixture consisting of killedbacteria of species Streptococcus pyogenes and Serratia marcescens. SeeTaniguchi et al., 2006, Anticancer Res. 26 (6A): 3997-4002. BCG isprepared from a strain of the attenuated live bovine tuberculosisbacillus, Mycobacterium bovis. See Venkataswamy et al., 2012, Vaccine.30 (6): 1038-1049.

3. Cell Based Therapies

Cell-based therapies for the treatment of cancer include administrationof immune cells (e.g. T cells, tumor-infiltrating lymphocytes (TILs),Natural Killer cells, and dendritic cells) to a subject. In autologouscell-based therapy, the immune cells are derived from the same subjectto which they are administered. In allogeneic cell-based therapy, theimmune cells are derived from one subject and administered to adifferent subject. The immune cells may be activated, for example, bytreatment with a cytokine, before administration to the subject. In someembodiments, the immune cells are genetically modified beforeadministration to the subject, for example, as in chimeric antigenreceptor (CAR) T cell immunotherapy.

In some embodiments, the cell-based therapy include an adoptive celltransfer (ACT). ACT typically consists of three parts: lympho-depletion,cell administration, and therapy with high doses of IL-2. Types of cellsthat may be administered in ACT include tumor infiltrating lymphocytes(TILs), T cell receptor (TCR)-transduced T cells, and chimeric antigenreceptor (CAR) T cells.

Tumor-infiltrating lymphocytes are immune cells that have been observedin many solid tumors, including breast cancer. They are a population ofcells comprising a mixture of cytotoxic T cells and helper T cells, aswell as B cells, macrophages, natural killer cells, and dendritic cells.The general procedure for autologous TIL therapy is as follows: (1) aresected tumor is digested into fragments; (2) each fragment is grown inIL-2 and the lymphocytes proliferate destroying the tumor; (3) after apure population of lymphocytes exists, these lymphocytes are expanded;and (4) after expansion up to 10¹¹ cells, lymphocytes are infused intothe patient. See Rosenberg et al., 2015, Science 348(6230):62-68, whichis incorporated by reference herein in its entirety.

TCR-transduced T cells are generated via genetic induction oftumor-specific TCRs. This is often done by cloning the particularantigen-specific TCR into a retroviral backbone. Blood is drawn frompatients and peripheral blood mononuclear cells (PBMCs) are extracted.PBMCs are stimulated with CD3 in the presence of IL-2 and thentransduced with the retrovirus encoding the antigen-specific TCR. Thesetransduced PBMCs are expanded further in vitro and infused back intopatients. See Robbins et al., 2015, Clinical Cancer Research21(5):1019-1027, which is incorporated by reference herein in itsentirety.

Chimeric antigen receptors (CARs) are recombinant receptors containingan extracellular antigen recognition domain, a transmembrane domain, anda cytoplasmic signaling domain (such as CD3ζ, CD28, and 4-1BB). CARspossess both antigen-binding and T-cell-activating functions. Therefore,T cells expressing CARs can recognize a wide range of cell surfaceantigens, including glycolipids, carbohydrates, and proteins, and canattack malignant cells expressing these antigens through the activationof cytoplasmic costimulation. See Pang et al., 2018, Mol Cancer 17: 91,which is incorporated by reference herein in its entirety.

In some embodiments, the cell-based therapy is a Natural Killer (NK)cell-based therapy. NK cells are large, granular lymphocytes that havethe ability to kill tumor cells without any prior sensitization orrestriction of major histocompatibility complex (MHC) moleculeexpression. See Uppendahl et al., 2017, Frontiers in Immunology 8: 1825.Adoptive transfer of autologous lymphokine-activated killer (LAK) cellswith high-dose IL-2 therapy have been evaluated in human clinicaltrials. Similar to LAK immunotherapy, cytokine-induced killer (CIK)cells arise from peripheral blood mononuclear cell cultures withstimulation of anti-CD3 mAb, IFN-γ, and IL-2. CIK cells arecharacterized by a mixed T-NK phenotype (CD3+CD56+) and demonstrateenhanced cytotoxic activity compared to LAK cells against ovarian andcervical cancer. Human clinical trials investigating adoptive transferof autologous CIK cells following primary debulking surgery and adjuvantcarboplatin/paclitaxel chemotherapy have also been conducted. See Liu etal., 2014, J Immunother 37(2): 116-122.

In some embodiments, the cell-based therapy is a dendritic cell-basedimmunotherapy. Vaccination with dendritic cells (DC)s treated with tumorlysates has been shown to increase therapeutic antitumor immuneresponses both in vitro and in vivo. See Jung et al., 2018,Translational Oncology 11(3): 686-690. DCs capture and process antigens,migrate into lymphoid organs, express lymphocyte costimulatorymolecules, and secrete cytokines that initiate immune responses. Theyalso stimulate immunological effector cells (T cells) that expressreceptors specific for tumor-associated antigens and reduce the numberof immune repressors such as CD4+CD25+Foxp3+ regulatory T (Treg) cells.For example, a DC vaccination strategy for renal cell carcinoma (RCC),which is based on a tumor cell lysate-DC hybrid, showed therapeuticpotential in preclinical and clinical trials. See Lim et al., 2007,Cancer Immunol Immunother 56: 1817-1829.

4. Cytokines

Several cytokines including IL-2, IL-12, IL-15, IL-18, and IL-21 havebeen used in the treatment of cancer for activation of immune cells suchas NK cells and T cells. IL-2 was one of the first cytokines usedclinically, with hopes of inducing antitumor immunity. As a single agentat high dose IL-2 induces remissions in some patients with renal cellcarcinoma (RCC) and metastatic melanoma. Low dose IL-2 has also beeninvestigated and aimed at selectively ligating the IL-2 αβγ receptor(IL-2Rαβγ) in an effort to reduce toxicity while maintaining biologicalactivity. See Romee et al., 2014, Scientifica, Volume 2014, Article ID205796, 18 pages, which is incorporated by reference herein in itsentirety.

Interleukin-15 (IL-15) is a cytokine with structural similarity toInterleukin-2 (IL-2). Like IL-2, IL-15 binds to and signals through acomplex composed of IL-2/IL-15 receptor beta chain (CD122) and thecommon gamma chain (gamma-C, CD132). Recombinant IL-15 has beenevaluated for treatment of solid tumors (e.g. melanoma, renal cellcarcinoma) and to support NK cells after adoptive transfer in cancerpatients. See Romee et al., cited above.

IL-12 is a heterodimeric cytokine composed of p35 and p40 subunits(IL-12α and β chains), originally identified as “NK cell stimulatoryfactor (NKSF)” based on its ability to enhance NK cell cytotoxicity.Upon encounter with pathogens, IL-12 is released by activated dendriticcells and macrophages and binds to its cognate receptor, which isprimarily expressed on activated T and NK cells. Numerous preclinicalstudies have suggested that IL-12 has antitumor potential. See Romee etal., cited above.

IL-18 is a member of the proinflammatory IL-1 family and, like IL-12, issecreted by activated phagocytes. IL-18 has demonstrated significantantitumor activity in preclinical animal models, and has been evaluatedin human clinical trials. See Robertson et al., 2006, Clinical CancerResearch 12: 4265-4273.

IL-21 has been used for antitumor immunotherapy due to its ability tostimulate NK cells and CD8⁺ T cells. For ex vivo NK cell expansion,membrane bound IL-21 has been expressed in K562 stimulator cells, witheffective results. See Denman et al., 2012, PLoS One 7(1)e30264.Recombinant human IL-21 was also shown to increase soluble CD25 andinduce expression of perforin and granzyme B on CD8+ cells. IL-21 hasbeen evaluated in several clinical trials for treatment of solid tumors.See Romee et al., cited above.

5. Cancer Vaccines

Therapeutic cancer vaccines eliminate cancer cells by strengthening apatients' own immune responses to the cancer, particularly CD8+ T cellmediated responses, with the assistance of suitable adjuvants. Thetherapeutic efficacy of cancer vaccines is dependent on the differentialexpression of tumor associated antigens (TAAs) by tumor cells relativeto normal cells. TAAs derive from cellular proteins and should be mainlyor selectively expressed on cancer cells to avoid either immunetolerance or autoimmunity effects. See Circelli et al., 2015, Vaccines3(3): 544-555. Cancer vaccines include, for example, dendritic cell (DC)based vaccines, peptide/protein vaccines, genetic vaccines, and tumorcell vaccines. See Ye et al., 2018, J Cancer 9(2): 263-268.

The combination therapies of the present invention may be utilized forthe treatment of oncological disorders.

In some embodiments, the combination therapy of the one or morepostcellular signaling factors and the additional therapeutic agentinhibits tumor cell growth. Accordingly, the invention further providesmethods of inhibiting tumor cell growth in a subject, comprisingadministering a composition comprising one or more postcellularsignaling factors and at least one additional therapeutic agent to thesubject, such that tumor cell growth is inhibited. In certainembodiments, treating cancer comprises extending survival or extendingtime to tumor progression as compared to a control. In some embodiments,the control is a subject that is treated with the additional therapeuticagent, but is not treated with the composition comprising one or morepostcellular signaling factors. In some embodiments, the control is asubject that is treated with the composition comprising one or morepostcellular signaling factors, but is not treated with the additionaltherapeutic agent. In some embodiments, the control is a subject that isnot treated with the additional therapeutic agent or the compositioncomprising one or more postcellular signaling factors. In certainembodiments, the subject is a human subject. In some embodiments, thesubject is identified as having a tumor prior to administration of thefirst dose of the composition comprising one or more postcellularsignaling factors or the first dose of the additional therapeutic agent.In certain embodiments, the subject has a tumor at the time of the firstadministration of the composition comprising one or more postcellularsignaling factors or at the time of first administration of theadditional therapeutic agent.

In certain embodiments, at least 1, 2, 3, 4, or 5 cycles of thecombination therapy are administered to the subject. The subject isassessed for response criteria at the end of each cycle. The subject isalso monitored throughout each cycle for adverse events (e.g., clotting,anemia, liver and kidney function, etc.) to ensure that the treatmentregimen is being sufficiently tolerated.

It should be noted that more than one additional therapeutic agent,e.g., 2, 3, 4, 5, or more additional therapeutic agents, may beadministered in combination with the composition comprising one or morepostcellular signaling factors.

In one embodiment, administration of the composition comprising one ormore postcellular signaling factors and the additional therapeutic agentas described herein results in one or more of reducing tumor size,weight or volume, increasing time to progression, inhibiting tumorgrowth and/or prolonging the survival time of a subject having anoncological disorder. In certain embodiments, administration of thecomposition comprising one or more postcellular signaling factors andthe additional therapeutic agent reduces tumor size, weight or volume,increases time to progression, inhibits tumor growth and/or prolongs thesurvival time of the subject by at least 1%, 2%, 3%, 4%, 5%, 10%, 20%,30%, 40%, 50%, 60%, 70%, 80%, 90%, 100%, 200%, 300%, 400% or 500%relative to a corresponding control subject that is administered thecomposition comprising one or more postcellular signaling factors aloneor the additional therapeutic agent alone. In certain embodiments,administration of the composition comprising one or more postcellularsignaling factors and the additional therapeutic agent reduces tumorsize, weight or volume, increases time to progression, inhibits tumorgrowth and/or prolongs the survival time of a population of subjectsafflicted with an oncological disorder by at least 1%, 2%, 3%, 4%, 5%,10%, 20%, 30%, 40%, 50%, 60%, 70%, 80%, 90%, 100%, 200%, 300%, 400% or500% relative to a corresponding population of control subjectsafflicted with the oncological disorder that is administered thecomposition comprising one or more postcellular signaling factors aloneor the additional therapeutic agent alone. In other embodiments,administration of the composition comprising one or more postcellularsignaling factors and the additional therapeutic agent stabilizes theoncological disorder in a subject with a progressive oncologicaldisorder prior to treatment.

In certain embodiments, treatment with the composition comprising one ormore postcellular signaling factors and the additional therapeutic agent(e.g. an immunotherapeutic) is combined with a further anti-neoplasticagent such as the standard of care for treatment of the particularcancer to be treated, for example by administering a standard dosage ofone or more antineoplastic (e.g. chemotherapeutic) agents. The standardof care for a particular cancer type can be determined by one of skillin the art based on, for example, the type and severity of the cancer,the age, weight, gender, and/or medical history of the subject, and thesuccess or failure of prior treatments. In certain embodiments of theinvention, the standard of care includes any one of or a combination ofsurgery, radiation, hormone therapy, antibody therapy, therapy withgrowth factors, cytokines, and chemotherapy. In one embodiment, theadditional anti-neoplastic agent is not an agent that inducesiron-dependent cellular disassembly and/or an immune checkpointmodulator.

In some embodiments, the combination therapy of the STING agonist andpurinergic receptor agonist and the additional therapeutic agentinhibits tumor cell growth. Accordingly, the invention further providesmethods of inhibiting tumor cell growth in a subject, comprisingadministering a STING agonist, a purinergic receptor agonist, and atleast one additional therapeutic agent to the subject, such that tumorcell growth is inhibited. In certain embodiments, treating cancercomprises extending survival or extending time to tumor progression ascompared to a control. In some embodiments, the control is a subjectthat is treated with the additional therapeutic agent, but is nottreated with the STING agonist and/or purinergic receptor agonist. Insome embodiments, the control is a subject that is treated with theSTING agonist and purinergic receptor agonist, but is not treated withthe additional therapeutic agent. In some embodiments, the control is asubject that is not treated with the additional therapeutic agent, theSTING agonist, or the purinergic receptor agonist. In certainembodiments, the subject is a human subject. In some embodiments, thesubject is identified as having a tumor prior to administration of thefirst dose of the STING agonist and/or purinergic receptor agonist orthe first dose of the additional therapeutic agent. In certainembodiments, the subject has a tumor at the time of the firstadministration of the STING agonist and/or purinergic receptor agonist,or at the time of first administration of the additional therapeuticagent.

In certain embodiments, at least 1, 2, 3, 4, or 5 cycles of thecombination therapy comprising the STING agonist, purinergic receptoragonist and one or more additional therapeutic agents are administeredto the subject. The subject is assessed for response criteria at the endof each cycle. The subject is also monitored throughout each cycle foradverse events (e.g., clotting anemia, liver and kidney function, etc.)to ensure that the treatment regimen is being sufficiently tolerated.

It should be noted that more than one additional therapeutic agent,e.g., 2, 3, 4, 5, or more additional therapeutic agents, may beadministered in combination with the STING agonist and purinergicreceptor agonist.

In one embodiment, administration of the STING agonist, the purinergicreceptor agonist and the additional therapeutic agent as describedherein results in one or more of, reducing tumor size, weight or volume,increasing time to progression, inhibiting tumor growth and/orprolonging the survival time of a subject having an oncologicaldisorder. In certain embodiments, administration of the STING agonist,the purinergic receptor agonist and the additional therapeutic agentreduces tumor size, weight or volume, increases time to progression,inhibits tumor growth and/or prolongs the survival time of the subjectby at least 1%, 2%, 3%, 4%, 5%, 10%, 20%, 30%, 40%, 50%, 60%, 70%, 80%,90%, 100%, 200%, 300%, 400% or 500% relative to a corresponding controlsubject that is administered the STING agonist and the purinergicreceptor agonist, but is not administered the additional therapeuticagent. In certain embodiments, administration of the STING agonist, thepurinergic receptor agonist and the additional therapeutic agent reducestumor size, weight or volume, increases time to progression, inhibitstumor growth and/or prolongs the survival time of a population ofsubjects afflicted with an oncological disorder by at least 1%, 2%, 3%,4%, 5%, 10%, 20%, 30%, 40%, 50%, 60%, 70%, 80%, 90%, 100%, 200%, 300%,400% or 500% relative to a corresponding population of control subjectsafflicted with the oncological disorder that is administered the STINGagonist and purinergic receptor agonist, but is not administered theadditional therapeutic agent. In other embodiments, administration ofthe STING agonist, the purinergic receptor agonist and the additionaltherapeutic agent stabilizes the oncological disorder in a subject witha progressive oncological disorder prior to treatment.

In certain embodiments, treatment with the STING agonist, the purinergicreceptor agonist and the additional therapeutic agent (e.g. animmunotherapeutic) is combined with a further anti-neoplastic agent suchas the standard of care for treatment of the particular cancer to betreated, for example by administering a standard dosage of one or moreantineoplastic (e.g. chemotherapeutic) agents. The standard of care fora particular cancer type can be determined by one of skill in the artbased on, for example, the type and severity of the cancer, the age,weight, gender, and/or medical history of the subject, and the successor failure of prior treatments. In certain embodiments of the invention,the standard of care includes any one of or a combination of surgery,radiation, hormone therapy, antibody therapy, therapy with growthfactors, cytokines, and chemotherapy. In one embodiment, the additionalanti-neoplastic agent is not an agent that induces iron-dependentcellular disassembly and/or an immune checkpoint modulator.

Additional anti-neoplastic agents suitable for use in the methodsdisclosed herein include, but are not limited to, chemotherapeuticagents (e.g., alkylating agents, such as Altretamine, Busulfan,Carboplatin, Carmustine, Chlorambucil, Cisplatin, Cyclophosphamide,Dacarbazine, Lomustine, Melphalan, Oxaliplatin, Temozolomide, Thiotepa;antimetabolites, such as 5-fluorouracil (5-FU), 6-mercaptopurine (6-MP);Capecitabine (Xeloda®), Cytarabine (Ara-C®), Floxuridine, Fludarabine,Gemcitabine (Gemzar®), Hydroxyurea, Methotrexate, Pemetrexed (Alimta®);anti-tumor antibiotics such as anthracyclines (e.g., Daunorubicin,Doxorubicin (Adriamycin®), Epirubicin, Idarubicin), Actinomycin-D,Bleomycin, Mitomycin-C, Mitoxantrone (also acts as a topoisomerase IIinhibitor); topoisomerase inhibitors, such as Topotecan, Irinotecan(CPT-11), Etoposide (VP-16), Teniposide, Mitoxantrone (also acts as ananti-tumor antibiotic); mitotic inhibitors such as Docetaxel,Estramustine, Ixabepilone, Paclitaxel, Vinblastine, Vincristine,Vinorelbine; corticosteroids such as Prednisone, Methylprednisolone(Solumedrol®), Dexamethasone (Decadron®); enzymes such asL-asparaginase, and bortezomib (Velcade®)). Anti-neoplastic agents alsoinclude biologic anti-cancer agents, e.g., anti-TNF antibodies, e.g.,adalimumab or infliximab; anti-CD20 antibodies, such as rituximab,anti-VEGF antibodies, such as bevacizumab; anti-HER2 antibodies, such astrastuzumab; anti-RSV, such as palivizumab.

VII. Methods for Identification of Agents that Induce CellularDisassembly and Production of Immunostimulatory Postcellular SignalingFactors

In addition to the agents that induce cellular disassembly andproduction of immunostimulatory postcellular signaling factors known inthe art and described herein, the disclosure further relates to methodsfor identifying other compounds that induce cellular disassembly andproduction of immunostimulatory postcellular signaling factors.

For example, in certain aspects, the disclosure relates to a method ofscreening for an agent that induces production of immunostimulatorypostcellular signaling factors in a cell, the method comprising: (a)providing a plurality of test agents (e.g., a library of test agents);and (b) evaluating each of the plurality of test agents for the abilityto induce production of immunostimulatory postcellular signaling factorsin a cell.

In some embodiments, evaluating the test agents for the ability toinduce production of immunostimulatory postcellular signaling factorscomprises contacting cells or tissue with each of the plurality of testagents.

Any of the methods described herein for evaluating immune response maybe used for evaluating the test agents for the ability to induceproduction of immunostimulatory postcellular signaling factors.

In one embodiment, evaluating each of the plurality of test agents forthe ability to induce production of immunostimulatory postcellularsignaling factors in a cell comprises culturing an immune cell togetherwith cells contacted with each of the plurality of test agents orexposing an immune cell to postcellular signaling factors produced bycells contacted with each of the plurality of test agents and measuringthe level or activity of NFκB, IRF or STING in the immune cell.

In one embodiment, the immune cell is a THP-1 cell. For example, NFκBand IRF activity may be measured in commercially available THP1-Dualcells (InvivoGen, San Diego, Calif.). THP1-Dual cells are human monocytecells that induce reporter proteins upon activation of either NFKB orIRF pathways. The THP-1 cells may be cultured with cells contacted withthe test agents or exposed to postcellular signaling factors produced bycells contacted with the test agents and then mixed with either 200 μlQuantiBlue (InvivoGen, San Diego, Calif.) or 50 μl QuantiLuc fordetection of NFKB and IRF activity. NFKB and IRF activity may bequantified by measuring absorbance or luminescence on a MolecularDevices plate reader.

In one embodiment, evaluating each of the plurality of test agentscomprises culturing T cells together with cells contacted with the testagents or exposing T cells to postcellular signaling factors produced bycells contacted with the test agents and measuring the activation andproliferation of the T cells.

In one embodiment, the immune cell is a macrophage. For example, NFκBand IRF activity may be measured in commercially available Raw-Dual™ andJ774-Dual™ macrophage cells (InvivoGen, San Diego, Calif.). Raw-Dual™and J774-Dual™ cells are mouse macrophage cell lines that inducereporter proteins upon activation of either NFKB or IRF pathways. Themacrophage cells may be cultured with cells contacted with the selectedcandidate immunostimulatory agent or exposed to postcellular signalingfactors produced by cells contacted with the selected candidateimmunostimulatory agent and then mixed with either 200 μl QuantiBlue(InvivoGen, San Diego, Calif.) or 50 μl QuantiLuc for detection of NFKBand IRF activity. NFKB and IRF activity may be quantified by measuringabsorbance or luminescence on a Molecular Devices plate reader.

In one embodiment, the immune cell is a dendritic cell. For example,co-stimulatory markers (e.g. CD80, CD86) or markers of enhanced antigenpresentation (e.g. MHCII) can be measured in dendritic cells by flowcytometry. The dendritic cells may be cultured with cells contacted withthe selected candidate immunostimulatory agent or exposed to compoundsproduced by cells contacted with the selected candidateimmunostimulatory agent and then stained with antibodies specific tocell surface markers indicative of activation status. Subsequently, theexpression level of these markers is determined by flow cytometry.

The ability of the test agents to induce production of immunostimulatorypostcellular signaling factors may also be evaluated by measuringpro-immune cytokine levels in macrophages and/or dendritic cells. Forexample, in some embodiments, evaluating the test agents comprisesculturing macrophage cells and/or dendritic cells with cells contactedwith the test agents or contacting macrophage cells and/or dendriticcells with postcellular signaling factors produced by cells contactedwith the test agents and measuring levels of pro-immune cytokines (e.g.IFN-α, IL-1, IL-12, IL-18, IL-2, IL-15, IL-4, IL-6, TNF-α, IL-17 andGMCSF). Pro-immune cytokine levels may be determined by methods known inthe art, such as ELISA.

VIII. Methods for Identification of Immunostimulatory PostcellularSignaling Factors Produced by Cells Exposed to a Stress Condition

Applicants have shown that treatment of cells with particular stressconditions (e.g. nutrient deprivation) results in the production andrelease of postcellular signaling factors that increase immune activity.These immunostimulatory postcellular signaling factors may be used inthe treatment of disorders that may benefit from increased immuneactivity, such as cancer and infections.

For example, in certain aspects, the disclosure relates to a method ofidentifying an immunostimulatory postcellular signaling factor, themethod comprising: (a) exposing a cell to a stress condition; (b)isolating one or more postcellular signaling factors produced by thecell after exposure to the stress condition; and (c) assaying the one ormore postcellular signaling factors for the ability to stimulate immuneresponse.

The one or more postcellular signaling factors produced by the cell maybe isolated, for example, by separating the cell from the medium inwhich it is grown (e.g. by centrifugation) and subjecting thisconditioned medium to further analysis. For example, in someembodiments, the conditioned medium is extracted with organic solventfollowed by HPLC fractionation. In other embodiments, the conditionedmedium is subjected to size exclusion chromatography and differentfractions are collected. For example, conditioned medium may be appliedto a size exclusion column and fractionated on FPLC.

The ability of the postcellular signaling factors to modulate immuneresponse may be assayed by contacting the postcellular signaling factorswith an immune cell and evaluating immune activity. Any of the methodsdescribed herein for measuring immune response such as measuring thelevel or activity of NFkB, IRF and/or STING, the level or activity ofmacrophages, the level or activity of monocytes, the level or activityof dendritic cells, the level or activity of CD4+, CD8+ or CD3+ cells,the level or activity of T cells, and the level or activity of apro-immune cytokine may be used to measure the ability of thepostcellular signaling factors to modulate immune response. For example,in some embodiments, collected fractions containing the postcellularsignaling factors are applied to THP-1 Dual cells and NFKB and/or IRF1reporter activity is assessed. Positive hit fractions are confirmed bytheir ability to induce NFKB or IRF activity in THP1 Dual cells.Positive hit fractions may be further characterized by mass spectrometry(large molecules) or NMR (small molecules) to identify particularcompounds with immune activity. The immune activity of the individualcompounds or species may be tested by the addition of synthetic orrecombinant forms of such compounds or species to THP1 Dual Cellsfollowed by measurement of NFKB or IRF activity, as described above.

The immune activity of the postcellular signaling factors may bedetermined by applying the postcellular signaling factors tomacrophages, monocytes, dendritic cells, CD4+, CD8+ or CD3+ cells,and/or T cells and measuring the level or activity of the cells. Forexample, in one embodiment, the assaying comprises treating an immunecell with the one or more postcellular signaling factors and measuringthe level or activity of NFκB activity in the immune cell. In oneembodiment, the assaying comprises treating T cells with the one or morepostcellular signaling factors and measuring the activation orproliferation of the T cells. In one embodiment, the assaying comprisescontacting an immune cell with the one or more postcellular signalingfactors and measuring the level or activity of NFκB, IRF or STING in theimmune cell. In one embodiment, the immune cell is a THP-1 cell.

The immunostimulatory activity of the postcellular signaling factors mayalso be evaluated in animal models, e.g. an animal cancer model. Forexample, in some embodiments, a postcellular signaling factor isadministered to an animal and an immune response is measured in theanimal, for example, by measuring changes in the level or activity ofNFkB, IRF and/or STING, the level or activity of macrophages, the levelor activity of monocytes, the level or activity of dendritic cells, thelevel or activity of CD4+, CD8+ or CD3+ cells, the level or activity ofT cells, and the level or activity of a pro-immune cytokine afteradministration of the postcellular signaling factor.

In one embodiment, the method further comprises selecting a postcellularsignaling factor that stimulates immune response.

Postcellular signaling factors that are produced at higher levels incells exposed to a stress condition relative to cells that are notexposed to a stress condition may be identified by comparing levels ofpostcellular signaling factors in treated and untreated cells. Forexample, in one embodiment, the method further comprises: i) measuringthe level of the one or more postcellular signaling factors produced bythe cell after exposure to the stress condition; ii) comparing the levelof the one or more postcellular signaling factors produced by the cellafter exposure to the stress condition to the level of the one or moretest agents in a control cell that is not exposed to the stresscondition; and iii) selecting postcellular signaling factors thatexhibit increased levels in the cell exposed to the stress conditionrelative to the control cell to generate the one or more postcellularsignaling factors for assaying in step (c).

In certain aspects, the disclosure provides methods of decreasing immuneresponse by administering to a cell, tissue or subject a purinergicreceptor antagonist alone or in combination with a Stimulator ofInterferon Genes (STING) antagonist. The decrease in immune response maybe used, for example, for treatment of a disorder such as an autoimmunedisorder, allergy, or an inflammatory disorder.

IX. Purinergic Receptor Antagonists

Purinergic receptors, also known as purinoceptors, are a family ofplasma membrane molecules that are found in almost all mammaliantissues. Within the field of purinergic signalling, these receptors havebeen implicated in learning and memory, locomotor and feeding behavior,and sleep. More specifically, they are involved in several cellularfunctions, including proliferation and migration of neural stem cells,vascular reactivity, apoptosis and cytokine secretion. These functionshave not been well characterized and the effect of the extracellularmicroenvironment on their function is also poorly understood.

There are five known distinct classes of purinergic receptors, known asP1, P2X, P2Y, P2Z, P2U and P2T receptors, and they are so classifiedbased on their respective activation molecules. For instance, P1receptors such as A₁, A_(2A), A_(2B) and A₃ receptors, are Gprotein-coupled receptors activated by adenosine. P2Y receptors, such asP2Y2, P2Y4 P2Y6, P2Y11, P2Y12, P2Y13 and P2Y14, are also Gprotein-coupled receptors but are activated by nucleotides such as ATP,ADP, UTP, UDP and UDP-glucose. P2X receptors are ligand-gated ionchannels activated by ATP.

The term “purinergic receptor antagonist” as used herein refers to anychemical entity, including but not limited to a small molecule, anucleoside, a nucleotide, a nucleobase, a sugar, a nucleic acid, anamino acid, a polysaccharide, a peptide, a polypeptide, a protein, anantibody, an aptamer (e.g., DNA/RNA/XNA/peptide aptamers) or a complexcomprising any combination of the aforementioned chemical entities, thatinhibits a purinergic receptor.

In one embodiment, the purinergic receptor antagonist used in a methodof the invention is a P2 receptor antagonist. In one embodiment, thepurinergic receptor antagonist is a P2Y receptor antagonist (e.g., P2Y1,P2Y2, P2Y4, P2Y6, P2Y11 or P2Y12 receptor antagonist). In oneembodiment, the purinergic receptor antagonist is a P2Y2, P2Y4 or P2Y6receptor antagonist. In one embodiment, the purinergic receptorantagonist is a P2Y1 receptor antagonist. In one embodiment, thepurinergic receptor antagonist is a P2Y2 receptor antagonist. In oneembodiment, the purinergic receptor antagonist is a P2Y4 receptorantagonist. In another embodiment, the purinergic receptor antagonist isa P2Y6 receptor antagonist. In one embodiment, the purinergic receptorantagonist is a P2Y11 receptor antagonist. In one embodiment, thepurinergic receptor antagonist is a P2Y12 receptor antagonist.

A “P2Y receptor antagonist” as used herein refers to any chemicalentity, including but not limited to a small molecule, a nucleoside, anucleotide, a nucleobase, a sugar, a nucleotide-sugar, an N-acetylatednucleotide-sugar, a nucleic acid, an amino acid, a polysaccharide, apeptide, a polypeptide, a protein, an antibody, an aptamer (e.g.,DNA/RNA/XNA/peptide aptamers) or a complex comprising any combination ofthe aforementioned chemical entities, that inhibits a P2Y receptor(e.g., P2Y1, P2Y2, P2Y4, P2Y6, P2Y11 or P2Y12 receptor agonist).

P2Y receptors initiate an intracellular cascade of events that lead toan increase in the cytosolic concentration of calcium ions. Accordingly,a P2Y receptor antagonist may be identified by treating a cell with achemical entity and a known P2Y receptor agonist (e.g. UTP) andmeasuring intracellular calcium ion concentrations. For example,commercially available fluorescent dyes such as fluo-4 and fura-2(Thermo Fisher Scientific, Waltham, Mass.) that fluoresce at greaterintensity when bound to Ca²⁺ may be used to measure intracellular Ca²⁺concentrations. Cells such as 1321N1 astrocytoma cells may be stablytransfected with a P2Y receptor for use in the assay. Fluorescence maybe measured, for example, by using a TriStar LB 942 plate reader(Berthold Technologies GmbH & Co. KG, Bad Wildbad, Germany). A decreasein intracellular Ca²⁺ concentrations in response to treatment with thechemical entity and the P2Y receptor agonist relative to treatment withthe P2Y receptor agonist alone would indicate that the chemical entityis a P2Y receptor antagonist.

In some embodiments, the P2Y receptor antagonist inhibits activation ofPhospholipase-C (PLC) and/or Protein Kinase-C (PKC). Accordingly, insome embodiments, a P2Y receptor antagonist may be identified bytreating a cell with a chemical entity and a known P2Y receptor agonistand assaying for PLC and/or PKC activity using utilizing assays commonlyknown in the art, for example as described in (Durban et al., 2007,European Journal of Lipid Science and Technology 109(5): 469-473; andGlickman et al., 2004, Assay Guidance Manual, Editors Sittampalam etal., Eli Lilly & Company and the National Center for AdvancingTranslational Sciences, Bethesda (Md.); the entire content of each ofwhich is incorporated by reference herein in its entirety. A decrease inPLC and/or PKC activation in response to treatment with the combinationof the chemical entity and the P2Y receptor agonist relative to the P2Yreceptor agonist alone would indicate that the chemical entity is a P2Yreceptor antagonist.

In some embodiments, the P2Y2 receptor antagonist regulates chemotaxisof macrophages and immune cells. In some embodiments, the P2Y2 receptorantagonist regulates neutrophil degranulation. In some embodiments, theP2Y2 receptor antagonist regulates proliferation and migration of smoothmuscle cells. In some embodiments, the P2Y2 receptor antagonistregulates secretion of chloridion in epithelial cells. In someembodiments, the P2Y2 receptor antagonist regulates secretion of waterand mucin from epithelial cells. Accordingly, in some embodiments, aP2Y2 receptor antagonist may be identified by assaying for any one ormore of chemotaxis of macrophages and immune cells, neutrophildegranulation, proliferation and migration of smooth muscle cells,secretion of chloridion in epithelial cells, and/or secretion of waterand mucin from epithelial cells using assays commonly known in the art,for example as described in Xu et al., 2018, Bioorganic and MedicinalChemistry 26: 366-374; and Linden et al., 2019, Annual Review ofImmunology 37:325-47, Liu et al., 2012, Med Chem 20: 1155; Muller etal., 2017, Oncotarget 8: 35962-72; the contents of each of which areincorporated by reference herein in their entirety. A modulation ofchemotaxis of macrophages and immune cells, neutrophil degranulation,proliferation and migration of smooth muscle cells, secretion ofchloridion in epithelial cells, and/or secretion of water and mucin fromepithelial cells in response to treatment with the chemical entity and aknown P2Y receptor agonist relative to the P2Y receptor agonist alonewould indicate that the chemical entity is a P2Y (e.g., P2Y2) receptorantagonist.

In one embodiment, the purinergic receptor antagonist (e.g., P2Yreceptor antagonist, such as a P2Y2, P2Y4 or P2Y6 receptor antagonist)is a small molecule compound or a nucleotide as defined herein.Non-limiting examples of small molecule and nucleotide-based purinergicreceptor antagonists (e.g., P2Y2, P2Y4 or P2Y6 receptor antagonist) aredescribed in International Patent Application Nos. WO 2004/047749, WO2011/054947, WO 2012/114268, WO 2014/097140, WO 2014/115072, WO2014/057078, WO 2014/057080, WO 2015/118019, WO 2012/036193, U.S. Pat.Nos. 8,106,073, 7,964,616, 7,709,469, 7,723,367, 7,741,493, 7,923,448,8,580,812, US Patent Application Publication Nos. 2012/0264708,2014/0037576, 2012/0034165, 2011/0267708, 2015/0004179, 2010/0105068,2010/0286390, 2010/0184802, 2012/0172366, 2012/0190680, 2014/0163035,2014/0275096, 2014/0275120, 2014/0275015, 2014/0275056, 2011/0092481,2012/0157494, 2012/0149718, 2011/0071143, 2011/0028502, 2012/0157436,2010/0311749, 2011/0046137, 2010/0075968, EP Patent ApplicationPublication Nos. 1448535 and 2604265, and Park et al. (Expert Opinion onTherapeutic Patents, 2017, 27(3): 257-267.

In one embodiment, the purinergic receptor antagonist (e.g., P2Yreceptor antagonist, such as a P2Y2, P2Y4 or P2Y6 receptor antagonist)is a compound selected from the following:

EVT 401, and AFC-5128, or a pharmaceutically acceptable salt, free acid,an analogue, a regioisomer, a stereoisomer or a tautomer thereof.

In one particular embodiment, the purinergic receptor antagonist is aP2Y2, P2Y4 or P2Y6 antagonist, and is a compound selected from thefollowing:

or a pharmaceutically acceptable salt, free acid, an analogue, aregioisomer, a stereoisomer or a tautomer thereof.

X. STING Antagonists

In some embodiments, the purinergic receptor antagonist is administeredin combination with a Stimulator of Interferon Genes (STING) antagonist.STING is an adaptor protein anchored in the endoplasmic reticulum (ER).In its basal state, STING exists as a dimer, with its C-terminal domainresiding in the cytosol; however, in the presence of cytosolic DNA(typically due to viral, bacterial, or parasitic infections) STINGundergoes conformational changes and transits from the ER through theGolgi to perinuclear endosomes. Consequently, STING recruitsTANK-binding kinase 1 (TBK1), which phosphorylates STING, rendering itmore accessible for the binding of the transcription factorIFN-regulatory factor 3 (IRF3). TBK1 then phosphorylates IRF3, whichtranslocates to the nucleus to drive transcription of interferon-β(IFN-β) and other innate immune genes. Bacterial cyclic-dinucleotides(CDNs) are natural ligands of STING and link the presence of cytosolicDNA to the activation of STING. For example, bacteria and mammaliancells generate CDNs via the DNA sensor cyclic GMP-AMP synthase(cGAS/MB21D1), which catalyzes the synthesis of cyclic GMP-AMP (cGAMP)from GTP and ATP upon DNA binding. Cells from cGAS-deficient mice wereunable to produce type I IFNs in response to cytosolic DNA. Upon DNAexposure within the cytosol, cGAS is the major receptor that directlybinds DNA, leading to cGAMP production, which in turn engages STING totrigger the remaining signaling events that drive IFN-β expression.STING pathway activation within antigen presenting cells (APCs) in thetumor microenvironment leads to production of IFN-β and the spontaneousgeneration of antitumor CD8+ T cell responses, allowing for control ofthe growth of several transplantable tumor cell models. See Corrales etal., 2016, J Clin. Invest. 126(7): 2404-2411.

The term “STING antagonist” as used herein refers to any chemicalentity, including but not limited to a small molecule, an oncogene, anucleoside, a nucleotide, a nucleobase, a sugar, a nucleic acid, anamino acid, a polysaccharide, a peptide, a polypeptide, a protein, anantibody, an aptamer (e.g., DNA/RNA/XNA/peptide aptamers) or a complexcomprising any combination of the aforementioned chemical entities, thatinhibits the STING pathway. In some embodiments, the STING antagonistinteracts directly with the STING protein. In some embodiments, theSTING antagonist interacts with a downstream component of the STINGpathway, for example, cyclic GMP-AMP synthase (cGAS), TBK1, IRF3 orIFN-β. In some embodiments, the STING antagonist reduces the level oractivity of one or more components of the STING pathway, e.g. STING,cyclic GMP-AMP synthase (cGAS), TBK1, IRF3 and/or IFN-β.

A chemical entity may be identified as a STING antagonist, for example,by treating a cell with the chemical entity in combination with a knownSTING agonist (e.g. cGMP) and measuring IRF3 activity. For example, anIRF reporter cell such as THP1-Dual™ cells (InvivoGen) may used toidentify STING antagonists. THP1-Dual™ cells are human THP1 monocytesthat have been engineered to contain an inducible IRF reporterconstruct. IRF activity is measured in these cells by assessing theactivity of a secreted luciferase. A decrease in IRF activity in cellstreated with the chemical entity and the STING agonist relative to cellstreated with the STING agonist alone would indicate that the chemicalentity is a STING antagonist.

A chemical entity may also or alternatively be identified as a STINGantagonist by treating a cell with the chemical entity in combinationwith a known STING agonist (e.g. cGMP) and measuring IFN-β expressionand/or activity. For example, antigen presenting cells (APCs), PBMCs,dendritic cells or the THP1-Dual™ cells described above may be treatedwith the chemical entity and the STING agonist and then IFN-β expressionmeasured by methods known in the art, such as ELISA. An IFN-β reportercell line such as B16-Blue IFN reporter cells (InvivoGen) may also beused to measure IFN-β expression in response to treatment with thechemical entity and the STING agonist. For the reporter cell line, IFN-βexpression may be measured by adding the substrate QUANTI-Blue(InvivoGen) and measuring color intensity using a spectrophotometer at620-655 nm. See Woo et al., 2014, Immunity 41(5): 830-842, which isincorporated by reference herein in its entirety. A decrease in IFN-βexpression and/or activity in the cells treated with the chemical entityand the STING agonist relative to cells treated with the STING agonistalone would indicate that the compound is a STING antagonist.

Another method that may alternatively or additionally be used foridentifying a chemical entity as a STING antagonist is through aHepAD38-derived reporter cell line that expresses firefly luciferase inresponse to the activation of the cyclic GMP-AMP synthase (cGAS)-STINGpathway. The reporter cells are treated with the chemical entity and theSTING agonist and the luciferase signal produced by the cells ismeasured several hours after treatment. See Liu et al., 2017, AntiviralResearch 147: 37-46, which is incorporated by reference herein in itsentirety. A decrease in luciferase activity in the reporter cellstreated with the chemical entity and the STING agonist relative to cellstreated with the STING agonist alone would indicate that the compound isa STING antagonist.

In one embodiment, the STING antagonist administered in combination witha purinergic receptor antagonist (e.g., a P2Y receptor antagonist, suchas a P2Y2, P2Y4 or P2Y6 antagonist) is a small molecule compound asdefined herein. Non-limiting examples of small molecule STINGantagonists are described in WO 2019/069269, WO 2019/055750, WO2018/234808, WO 2018/234805, WO 2017/123657, Haag et al. (Nature, 2018,559:269-273), and Koch et al. (ACS Chem Biol., 2018, 13(4):1066-1081),each incorporated herein by reference in its entirety.

In one embodiment, the STING antagonist is a kinase inhibitor, such as aTBK1 kinase inhibitor (e.g., staurosporine, BX765 and MRT67307). In someembodiments, the STING antagonist is an inhibitor of the ATP6V1A gene.The ATP6V1A gene encodes a component of vacuolar ATPase, a multisubunitenzyme that mediates acidification of eukaryotic intracellularorganelles.

In one embodiment, the STING antagonist is a cyclic dinucleotide (CDN)compound. Although most CDNs have been characterized as STING agonists,some CDNs have been shown to function as STING antagonists instead.Accordingly, in one embodiment, the STING antagonist is a CDN compoundrepresented by the following structural formula:

or a pharmaceutically acceptable salt, a free acid, a regioisomer, astereoisomer or a tautomer thereof wherein Ar, for each instance, isindependently optionally substituted monocyclic or bicyclic heteroarylhaving at least one nitrogen atom (e.g., 1, 2, 3 or 4) and optionallyone or more heteroatoms selected from O and S; wherein R, for eachinstance, is independently hydrogen or an optionally substituted C₁-C₄alkyl; wherein each oxygen atom in the two phosphate groups and the ORgroups is optionally and independently substituted with S; wherein eachOR group and each O⁻ is optionally substituted with a halogen (e.g., F,Cl). In one embodiment, each Ar is independently selected from the groupconsisting of

In one embodiment, the STING antagonist is an imidazole derivative,including dimeric forms of imidazole-based compounds. Although someamidobenziimidazole and dimeric amidobenzimidazole compounds have beencharacterized as STING agonists, certain imidazole derivatives have beenshown to function instead as STING antagonists. Accordingly, in oneembodiment, the STING antagonist is a dimeric compound represented bythe following structural formula:

or a pharmaceutically acceptable salt, a free acid, a regioisomer, astereoisomer or a tautomer thereof wherein one or two of X¹, X² and X³is/are nitrogen while the other(s) is/are carbon; wherein one or two ofX⁴, X⁵ and X⁶ is/are nitrogen while the other(s) is/are carbon; whereinR is an optionally substituted C₁-C₆ alkyl, C₂-C₆ alkenyl or C₂-C₆alkynyl covalently linked to ring A¹ and ring A²; each of rings A¹, A²,B¹ and B² is optionally substituted.

In one embodiment, the STING antagonist is an amido-substitutedbi-heterocyclic compound represented by the following formula:

or a pharmaceutically acceptable salt, a free acid, a regioisomer, astereoisomer or a tautomer thereof the bi-heterocyclic ring isoptionally further substituted; wherein Y is C, O, or S; X¹, X², X³ andX⁴ are each independent C or N; and R1 and R2 are each independently anoptionally substituted alkyl, an optionally substituted alkenyl, anoptionally substituted alkynyl, an optionally substituted cycloalkyl, anoptionally substituted aryl, an optionally substituted heteroaryl, or anoptionally substituted heterocyclyl.

In one embodiment, the STING antagonist is a compound selected from thefollowing:

or a pharmaceutically acceptable salt, a free acid, a regioisomer, astereoisomer or a tautomer thereof.

In one embodiment, the STING antagonist is an oncogene, an oncoprotein,or a nucleic acid. Non-limiting examples of oncogene, oncoprotein andnucleic acid STING antagonists are described in Lau et al. (Science,2015, 350(6260):568-571), Corrales et al. (Journal of Immunology, 2016,196(7): 3191-3198), Maringer et al. (Cytokine & Growth Factor Reviews,2014, 25(6):669-679), Shaikh et al. (Microbial Pathogenesis, 2019,132:162-162), and Wang et al. (Nucleic Acids Research, 2018, 46(8):4054-4071), each of which is incorporated by reference herein in itsentirety. In some embodiments, the STING antagonist is a viral oncogeneor oncoprotein, or a fragment thereof. In some embodiments the viraloncogene or oncoprotein is selected from the group consisting of E6(e.g. HPV18 E6), E7 (e.g. HPV18 E7), E1A (e.g. hAd5 E1A) and SV40 LargeT antigen.

XI. Methods of Decreasing Immune Activity

The purinergic receptor antagonists (e.g., P2Y receptor antagonist, suchas a P2Y2, P2Y4 or P2Y6 receptor antagonists) described herein may beused to decrease immune activity in a cell, tissue or in a subject, forexample, a subject who would benefit from decreased immune activity. Forexample, in some aspects, the disclosure relates to a method ofdecreasing immune activity in a cell, tissue or subject, the methodcomprising administering to the cell, tissue or subject a purinergicreceptor antagonist in an amount sufficient to decrease the immuneactivity relative to a cell, tissue or subject that is not treated withthe purinergic receptor antagonist. In some embodiments, the purinergicreceptor antagonist is administered in combination with a STINGantagonist in an amount sufficient to decrease the immune activityrelative to a cell, tissue or subject that is not treated with thepurinergic receptor antagonist and/or the STING antagonist.

In some aspects, the disclosure relates to a method of decreasing immuneactivity in a cell, the method comprising administering to the cell apurinergic receptor antagonist (e.g., a P2Y receptor antagonist, such asa P2Y2, P2Y4 or P2Y6 antagonist) wherein the purinergic receptorantagonist are administered in an amount sufficient to decrease theimmune activity relative to a cell that is not treated with thepurinergic receptor antagonist. In some embodiments, the purinergicreceptor antagonist is administered in combination with a STINGantagonist in an amount sufficient to decrease the immune activityrelative to a cell that is not treated with the purinergic receptorantagonist and/or the STING antagonist.

In some aspects, the disclosure relates to a method of decreasing immuneactivity in a target tissue, the method comprising administering to thetarget tissue a purinergic receptor antagonist (e.g., a P2Y receptorantagonist, such as a P2Y2, P2Y4 or P2Y6 antagonist), wherein thepurinergic receptor antagonist is administered in an amount sufficientto decrease the immune activity relative to a tissue that is not treatedwith the purinergic receptor antagonist. In some embodiments, thepurinergic receptor antagonist is administered in combination with aSTING antagonist in an amount sufficient to decrease the immune activityrelative to a tissue that is not treated with the purinergic receptorantagonist and/or the STING antagonist.

In some aspects, the disclosure relates to a method of decreasing immuneactivity in a subject, the method comprising administering to thesubject a purinergic receptor antagonist, wherein the purinergicreceptor antagonist (e.g., a P2Y receptor antagonist, such as a P2Y2,P2Y4 or P2Y6 antagonist) is administered in an amount sufficient todecrease the immune activity relative to a subject that is not treatedwith the purinergic receptor antagonist. In one embodiment, the subjectis in need of a decreased immune activity. In some embodiments, thepurinergic receptor antagonist is administered in combination with aSTING antagonist in an amount sufficient to decrease the immune activityrelative to a tissue that is not treated with the purinergic receptorantagonist and/or the STING antagonist.

According to some methods of the disclosure, immune activity may beregulated by interaction of the purinergic receptor antagonist(optionally in combination with the STING antagonist) with a broad rangeof immune cells, including, for example, any one or more of mast cells,Natural Killer (NK) cells, basophils, neutrophils, monocytes,macrophages, dendritic cells, eosinophils, lymphocytes (e.g.B-lymphocytes (B-cells)), and T-lymphocytes (T-cells)).

Decreasing Immune Activity

The purinergic receptor antagonists (e.g., a P2Y receptor antagonist,such as a P2Y2, P2Y4 or P2Y6 antagonist) and STING antagonists describedherein may decrease immune activity in a tissue or subject by decreasingthe level or activity of any one or more of the immune cells describedherein, for example, macrophages, monocytes, dendritic cells, and CD4+,CD8+ or CD3+ cells (e.g. CD4+, CD8+ or CD3+ T cells) in the tissue orsubject. For example, in one embodiment, the purinergic receptorantagonist is administered in an amount sufficient to decrease in thetissue or subject one or more of the level or activity of macrophages,the level or activity of monocytes, the level or activity of dendriticcells, the level or activity of T cells, and the level or activity ofCD4⁺, CD8+ or CD3+ cells (e.g. CD4+, CD8+ or CD3+ T cells). In oneembodiment, the purinergic receptor antagonist and the STING antagonistare administered in an amount sufficient to decrease in the tissue orsubject one or more of the level or activity of macrophages, the levelor activity of monocytes, the level or activity of dendritic cells, thelevel or activity of T cells, and the level or activity of CD4+, CD8+ orCD3+ cells (e.g. CD4+, CD8+ or CD3+ T cells).

The purinergic receptor antagonist and the STING antagonist may alsodecrease immune activity in a cell, tissue or subject by decreasing thelevel or activity of a pro-immune cytokine. For example, in someembodiments, the purinergic receptor antagonist is administered in anamount sufficient to decrease in a cell, tissue or subject the level oractivity of a pro-immune cytokine. In some embodiments, the STINGantagonist and the purinergic receptor antagonist are administered in anamount sufficient to decrease in a cell, tissue or subject the level oractivity of a pro-immune cytokine. In one embodiment, the pro-immunecytokine is selected from IFN-α, IL-1, IL-12, IL-18, IL-2, IL-15, IL-4,IL-6, TNF-α, IL-17 and GMCSF.

The purinergic receptor antagonist and the STING antagonist may alsodecrease immune activity in a cell, tissue or subject by decreasing thelevel or activity of positive regulators of the immune response such asnuclear factor kappa-light-chain-enhancer of activated B cells (NFkB),interferon regulatory factor (IRF), and stimulator of interferon genes(STING). For example, in some embodiments, the purinergic receptorantagonist is administered in an amount sufficient to decrease in acell, tissue or subject the level or activity of NFkB, IRF and/or STING.In some embodiments, the STING antagonist and the purinergic receptorantagonist are administered in an amount sufficient to decrease in acell, tissue or subject the level or activity of NFkB, IRF and/or STING.

In some aspects, the disclosure relates to a method of decreasing thelevel or activity of NFkB in a cell, tissue or subject, comprisingadministering to the cell, tissue or subject a purinergic receptorantagonist (e.g., a P2Y receptor antagonist, such as a P2Y2, P2Y4 orP2Y6 antagonist) in an amount sufficient to decrease the level oractivity of NFkB relative to a cell, tissue or subject that is nottreated with the purinergic receptor antagonist.

In some aspects, the disclosure relates to a method of decreasing thelevel or activity of NFkB in a cell, tissue or subject, comprisingadministering to the cell, tissue or subject, in combination, a STINGantagonist and a purinergic receptor antagonist (e.g., a P2Y receptorantagonist, such as a P2Y2, P2Y4 or P2Y6 antagonist) in an amountsufficient to decrease the level or activity of NFkB relative to a cell,tissue or subject that is not treated with the STING antagonist and/orthe purinergic receptor antagonist.

In one embodiment, the subject is in need of a decreased level oractivity of NFkB.

In one embodiment, the level or activity of NFkB is decreased by atleast 10%, 20%, 30%, 40%, 50%, 60%, 70%, 80%, 90% or 99% relative to acell, tissue or subject that is not treated with the agent that inhibitsiron-dependent cellular disassembly.

In some aspects, the disclosure relates to a method of decreasing thelevel or activity of IRF or STING in a cell, tissue or subject,comprising administering to the cell, tissue or subject, a purinergicreceptor antagonist (e.g., a P2Y receptor antagonist, such as a P2Y2,P2Y4 or P2Y6 antagonist) in an amount sufficient to decrease the levelor activity of IRF or STING relative to a cell, tissue or subject thatis not treated with the purinergic receptor antagonist.

In some aspects, the disclosure relates to a method of decreasing thelevel or activity of IRF or STING in a cell, tissue or subject,comprising administering to the cell, tissue or subject, in combination,a STING antagonist and a purinergic receptor antagonist (e.g., a P2Yreceptor antagonist, such as a P2Y2, P2Y4 or P2Y6 antagonist) in anamount sufficient to decrease the level or activity of IRF or STINGrelative to a cell, tissue or subject that is not treated with the STINGantagonist and/or the purinergic receptor antagonist.

In one embodiment, the subject is in need of a decreased level oractivity of IRF or STING.

In one embodiment, the level or activity of IRF or STING is decreased byat least 10%, 20%, 30%, 40%, 50%, 60%, 70%, 80%, 90% or 99% relative toa cell, tissue or subject that is not treated with the STING antagonistand/or the purinergic receptor antagonist.

In some aspects, the disclosure relates to a method of decreasing thelevel or activity of macrophages, monocytes, dendritic cells or T cellsin a tissue or subject, comprising administering to the tissue orsubject a purinergic receptor antagonist (e.g., a P2Y receptorantagonist, such as a P2Y2, P2Y4 or P2Y6 antagonist) in an amountsufficient to decrease the level or activity of macrophages, monocytes,dendritic cells or T cells relative to a tissue or subject that is nottreated with the purinergic receptor antagonist.

In some aspects, the disclosure relates to a method of decreasing thelevel or activity of macrophages, monocytes, dendritic cells or T cellsin a tissue or subject, comprising administering to the tissue orsubject, in combination, a STING antagonist and a purinergic receptorantagonist (e.g., a P2Y receptor antagonist, such as a P2Y2, P2Y4 orP2Y6 antagonist) in an amount sufficient to decrease the level oractivity of macrophages, monocytes, dendritic cells or T cells relativeto a tissue or subject that is not treated with the STING antagonistand/or the purinergic receptor antagonist.

In one embodiment, the subject is in need of a decreased level oractivity of macrophages, monocytes, dendritic cells or T cells.

In one embodiment, the level or activity of macrophages, monocytes,dendritic cells, or T cells is decreased by at least 10%, 20%, 30%, 40%,50%, 60%, 70%, 80%, 90% or 99% relative to a tissue or subject that isnot treated with the agent that inhibits iron-dependent cellulardisassembly.

In some aspects, the disclosure relates to a method of decreasing thelevel or activity of CD4+, CD8+, or CD3+ cells in a tissue or subject,comprising administering to the subject a purinergic receptor antagonist(e.g., a P2Y receptor antagonist, such as a P2Y2, P2Y4 or P2Y6antagonist) in an amount sufficient to decrease the level or activity ofCD4+, CD8+, or CD3+ cells relative to a tissue or subject that is nottreated with the purinergic receptor antagonist.

In some aspects, the disclosure relates to a method of decreasing thelevel or activity of CD4+, CD8+, or CD3+ cells in a tissue or subject,comprising administering to the subject, in combination, a STINGantagonist and a purinergic receptor antagonist (e.g., a P2Y receptorantagonist, such as a P2Y2, P2Y4 or P2Y6 antagonist) in an amountsufficient to decrease the level or activity of CD4+, CD8+, or CD3+cells relative to a tissue or subject that is not treated with the STINGantagonist and/or the purinergic receptor antagonist.

In one embodiment, the subject is in need of a decreased level oractivity of CD4+, CD8+, or CD3+ cells.

In one embodiment, the level or activity of CD4+, CD8+, or CD3+ cells isdecreased by at least 10%, 20%, 30%, 40%, 50%, 60%, 70%, 80%, 90% or 99%relative to a tissue or subject that is not treated with the STINGantagonist and/or the purinergic receptor antagonist.

In some aspects, the disclosure relates to a method of decreasing thelevel or activity of a pro-immune cytokine in a cell, tissue or subject,comprising administering to the cell, tissue or subject a purinergicreceptor antagonist (e.g., a P2Y receptor antagonist, such as a P2Y2,P2Y4 or P2Y6 antagonist) in an amount sufficient to decrease the levelor activity of the pro-immune cytokine relative to a cell, tissue orsubject that is not treated with the the purinergic receptor antagonist.

In some aspects, the disclosure relates to a method of decreasing thelevel or activity of a pro-immune cytokine in a cell, tissue or subject,comprising administering to the cell, tissue or subject, in combination,a STING antagonist and a purinergic receptor antagonist (e.g., a P2Yreceptor antagonist, such as a P2Y2, P2Y4 or P2Y6 antagonist) in anamount sufficient to decrease the level or activity of the pro-immunecytokine relative to a cell, tissue or subject that is not treated withthe STING antagonist and/or the purinergic receptor antagonist.

In one embodiment, the subject is in need of a decreased level oractivity of a pro-immune cytokine.

In one embodiment, the level or activity of the pro-immune cytokine isdecreased by at least 10%, 20%, 30%, 40%, 50%, 60%, 70%, 80%, 90% or 99%relative to a cell, tissue or subject that is not treated with the STINGantagonist and/or the purinergic receptor antagonist.

In one embodiment, the pro-immune cytokine is selected from IFN-α, IL-1,IL-12, IL-18, IL-2, IL-15, IL-4, IL-6, TNF-α, IL-17 and GMCSF.

In one embodiment, the method further includes, before theadministration, evaluating the cell, tissue or subject for one or moreof the level or activity of NFkB; the level or activity of macrophages;the level or activity of monocytes; the level or activity of dendriticcells; the level or activity of CD4+ cells, CD8+ cells, or CD3+ cells;the level or activity of T cells; and the level or activity of apro-immune cytokine.

In one embodiment, the method further includes, after theadministration, evaluating the cell, tissue or subject for one or moreof the level or activity of NFkB; the level or activity of macrophages;the level or activity of monocytes; the level or activity of dendriticcells; the level or activity of CD4+ cells, CD8+ cells or CD3+ cells;the level or activity of T cells; and the level or activity of apro-immune cytokine.

Regulatory T cells (Tregs) are a class of CD4+CD25+ T cells thatsuppress the activity of other immune cells. Tregs are central to immunesystem homeostasis, and play a major role in maintaining tolerance toself-antigens and in modulating the immune response to foreign antigens.Multiple autoimmune and inflammatory diseases, including Type 1 Diabetes(T1D), Systemic Lupus Erythematosus (SLE), and Graft-versus-Host Disease(GVHD) have been shown to have a deficiency of Treg cell numbers or Tregfunction. One assay to determine Treg activity measures thephosphorylation of the signal transduction protein STAT5, measured byflow cytometry with an antibody specific for the phosphorylated protein(pSTAT5). STAT5 is essential for Treg development, and a constitutivelyactivated form of STAT5 expressed in CD4+CD25+ cells is sufficient forthe production of Treg cells in the absence of IL-2 (Mahmud, S. A., etal., 2013, JAKSTAT 2:e23154). Therefore, measurement of phosphorylatedSTAT5 (pSTAT5) in Treg cells provides a method for determiningactivation of these cells. Another assay for functional activationmeasures proliferation of Treg cells. Treg proliferation can be measuredby tritiated thymidine incorporation into purified Treg cells, by anincrease in Treg cell numbers in a mixed population of cells measured byflow cytometry and the frequencies of CD4+CD25+FOXP3+ or theCD4+CD25+CD127− marker phenotypes, by increased expression in Treg cellsof proliferation-associated cell cycle proteins, such as Ki-67, or bymeasurement of the cell division-associated dilution of a vitalfluorescent dye such as carboxyfluorescein succinimidyl ester (CFSE) byflow cytometry in Treg cells. Another assay for functional activation ofTregs is the increased stability of Tregs. pTreg cells are thought bysome to be unstable, and have the potential to differentiate into Th1and Th17 effector T cells. Activation of Tregs can stabilize Tregs andprevent this differentiation (Chen, Q., et al., 2011, J Immunol.186:6329-37). Another outcome of stimulation of Tregs is the stimulationof the level of Treg functional effector molecules, such as CTLA4, GITR,LAG3, TIGIT, IL-10, CD39, and CD73, which contribute to theimmunosuppressive activity of Tregs. Production of these effectormolecules by Tregs may be determined by methods known in the art, suchas ELISA.

XII. Methods of Treating Disorders That Would Benefit from DecreasedImmune Activity

Applicants have shown that combinations of a STING agonist and apurinergic receptor agonist (e.g., a P2Y receptor antagonist, such as aP2Y2, P2Y4 or P2Y6 antagonist) increase immune response as evidenced byincreases in IRF activity in immune cells. These results suggest that apurinergic receptor antagonist, optionally in combination with a STINGantagonist, would decrease immune response by preventing the inductionof immunostimulatory activity. Accordingly, administration of apurinergic receptor antagonist (e.g., a P2Y receptor antagonist, such asa P2Y2, P2Y4 or P2Y6 antagonist) optionally in combination with a STINGantagonist may be used to treat disorders that would benefit fromdecreased immune activity, such as inflammatory diseases or conditionsincluding inflammation, acute organ injury, tissue damage, sepsis,ischemia, atherosclerosis, neurodegenerative disorders, andimmune-related diseases or conditions.

Inflammatory Diseases or Conditions

In some aspects, the present disclosure relates to a method of treatingan inflammatory disease or condition comprising administering to thesubject a purinergic receptor antagonist (e.g., a P2Y receptorantagonist, such as a P2Y2, P2Y4 or P2Y6 antagonist) in an amountsufficient to treat the inflammatory disease or condition in thesubject.

In some aspects, the present disclosure relates to a method of treatingan inflammatory disease or condition comprising administering to thesubject, in combination, a STING antagonist and a purinergic receptorantagonist (e.g., a P2Y receptor antagonist, such as a P2Y2, P2Y4 orP2Y6 antagonist) in an amount sufficient to treat the inflammatorydisease or condition in the subject.

In some embodiments, the inflammatory disease or condition is aninflammatory disease or condition in which iron-dependent cellulardisassembly (e.g. ferroptosis) is detrimental.

In some embodiments, the inflammatory disease or condition is selectedfrom the group consisting of inflammation (e.g. sterile inflammation),acute organ injury, tissue damage, sepsis, ischemia, andatherosclerosis.

In some embodiments, the inflammatory disease is an autoimmune diseaseor immune-related disease or condition. Autoimmune diseases are diseasesin which the immune system attacks its own proteins, cells, and tissues.Autoimmune diseases include diseases that affect organs such as theheart, kidney, liver, lung, reproductive organs, digestive system, orskin. Autoimmune diseases include diseases that affect glands, includingthe endocrine, adrenal, thyroid, salivary and exocrine glands, and thepancreas. Autoimmune diseases can also be multi-glandular. Autoimmunediseases can target one or more tissues, for example connective tissue,muscle, or blood. Autoimmune diseases can target the nervous system oreyes, ears or vascular system. Autoimmune diseases can also be systemic,affecting multiple organs, tissues and/or systems. In some embodiments,an autoimmune disease or condition is an inflammatory disease orcondition.

Non-limiting examples of autoimmune or immune-related diseases orconditions include systemic lupus erythematosus, rheumatoid arthritis,Type I diabetes, Type II diabetes, multiple sclerosis (MS), allergies,asthma, psoriasis, amyotrophic lateral sclerosis (ALS), organtransplant/graft-vs-host disease (GVHD), and ulcerative colitis.

In some embodiments, the immune-related condition is an allergy orallergic condition, for example, an allergy or allergic condition inwhich iron-dependent cellular disassembly (e.g. ferroptosis) isdetrimental. An allergy or allergic condition is a hypersensitivereaction to allergens (e.g. lipids or proteins) in the environment.Allergens are antigens to which atopic patients respond with IgEantibody responses subsequently leading to allergic reactions. Allergensinclude environmental allergens (e.g. house dust mite, birch pollen,grass pollen, cat antigens, cockroach antigens), or food allergens (e.g.cow milk, peanut, shrimp, soybean), or a combination thereof. IgEmolecules are important in allergic responses because of their role ineffector cell (mast cell, basophiles and eosinophiles) activation.Allergies and allergic conditions include but are not limited to asthma,chronic obstructive pulmonary disease, hay fever (seasonal rhinitis),hives, and eczema.

In some embodiments, the immune-related condition is an autoinflammatorycondition. Autoinflammatory conditions result from a dysfunction in theinnate immune system, and constitute a broad range of geneticallymediated conditions characterized by recurrent attacks of systemicinflammation with primary physical manifestations of fever, rash,serositis, lymphadenopathy, and musculoskeletal symptoms. Geneticmutations that usually cause some dysregulation of the innate immunesystem underlie the etiology of autoinflammatory conditions.

In some embodiments, the disorder is neuroinflammation.Neuroinflammation is a chronic inflammation of the nervous system and isoften associated with brain injury and neurodegenerative disorders.Neurodegenerative disorders involve the progressive loss of structure orfunction of neurons, and may involve death of neurons. In someembodiments, the disorder is a neurodegenerative disorder, e.g.Parkinson's disease, Huntington's disease, or Alzheimer's disease. SeeChen et al., 2015, J. Biol. Chem. 290: 28097-28106, which isincorporated by reference herein in its entirety. In some embodiments,the condition is traumatic or hemorrhagic brain injury. See Stockwell etal., 2017, Cell 171: 273-285, which is incorporated by reference hereinin its entirety.

XIII. Pharmaceutical Compositions and Modes of Administration

The pharmaceutical compositions described herein may be administered toa subject in any suitable formulation. These include, for example,liquid, semi-solid, and solid dosage forms, The preferred form dependson the intended mode of administration and therapeutic application.

In certain embodiments the composition is suitable for oraladministration. In certain embodiments, the formulation is suitable forparenteral administration, including topical administration andintravenous, intraperitoneal, intramuscular, and subcutaneous,injections. In a particular embodiment, the composition is suitable forintravenous administration.

Pharmaceutical compositions for parenteral administration includeaqueous solutions of the active compounds in water-soluble form. Forintravenous administration, the formulation may be an aqueous solution.The aqueous solution may include Hank's solution, Ringer's solution,phosphate buffered saline (PBS), physiological saline buffer or othersuitable salts or combinations to achieve the appropriate pH andosmolarity for parenterally delivered formulations. Aqueous solutionscan be used to dilute the formulations for administration to the desiredconcentration. The aqueous solution may contain substances whichincrease the viscosity of the solution, such as sodium carboxymethylcellulose, sorbitol, or dextran. In some embodiments, the formulationincludes a phosphate buffer saline solution which contains sodiumphosphate dibasic, potassium phosphate monobasic, potassium chloride,sodium chloride and water for injection.

Formulations suitable for topical administration include liquid orsemi-liquid preparations suitable for penetration through the skin, suchas liniments, lotions, creams, ointments or pastes, and drops suitablefor administration to the eye, ear, or nose. Formulations suitable fororal administration include preparations containing an inert diluent oran assimilable edible carrier. The formulation for oral administrationmay be enclosed in hard or soft shell gelatin capsule, or it may becompressed into tablets, or it may be incorporated directly with thefood of the diet. When the dosage unit form is a capsule, it maycontain, in addition to materials of the above type, a liquid carrier.Various other materials may be present as coatings or to otherwisemodify the physical form of the dosage unit. Pharmaceutical compositionssuitable for use in the present invention include compositions whereinthe active ingredients are contained in an effective amount to achieveits intended purpose. Determination of the effective amounts is wellwithin the capability of those skilled in the art, especially in lightof the detailed disclosure provided herein. In addition to the activeingredients, these pharmaceutical compositions may contain suitablepharmaceutically acceptable carriers including excipients andauxiliaries which facilitate processing of the active compounds intopreparations which can be used pharmaceutically.

As will be readily apparent to one skilled in the art, the useful invivo dosage to be administered and the particular mode of administrationwill vary depending upon the age, body weight, the severity of theaffliction, and mammalian species treated, the particular compoundsemployed, and the specific use for which these compounds are employed.The determination of effective dosage levels, that is the dosage levelsnecessary to achieve the desired result, can be accomplished by oneskilled in the art using routine methods, for example, human clinicaltrials, animal models, and in vitro studies.

In certain embodiments, the composition is delivered orally. In certainembodiments, the composition is administered parenterally. In certainembodiments, the compositions is delivered by injection or infusion. Incertain embodiments, the composition is delivered topically includingtransmucosally. In certain embodiments, the composition is delivered byinhalation. In one embodiment, the compositions provided herein may beadministered by injecting directly to a tumor. In some embodiments, thecompositions may be administered by intravenous injection or intravenousinfusion. In certain embodiments, administration is systemic. In certainembodiments, administration is local.

In certain aspects, the present disclosure relates to a pharmaceuticalcomposition comprising a STING agonist and/or a purinergic receptoragonist. In some embodiments, the STING agonist and the purinergicreceptor agonist are administered in separate pharmaceuticalcompositions. In some embodiments, the STING agonist and the purinergicreceptor agonist are administered in the same pharmaceuticalcomposition.

In certain aspects, the present disclosure relates to a pharmaceuticalcomposition comprising a STING antagonist and/or a purinergic receptorantagonist. In some embodiments, the STING antagonist and the purinergicreceptor antagonist are administered in separate pharmaceuticalcompositions. In some embodiments, the STING antagonist and thepurinergic receptor antagonist are administered in the samepharmaceutical composition.

EXAMPLES Example 1: IRF Signaling in Human THP1 Monocytes Treated withNutrient-Deprived or UV-Treated HeLa Cells Experimental Design

HeLa cervical cancer cells were grown in DMEM containing 10% FBS(standard culture conditions), or in PBS (nutrient-deprivation) for 48hours. Alternatively, HeLa cervical cancer cells were grown in eitherDMEM containing 10% FBS (standard culture conditions) and exposed to UVirradiation. Cell bodies were pelleted and resuspended in fresh tissueculture medium and co-cultured with THP1-Dual cells for an additional 24hrs. THP1 supernatants were then assessed for NfkB or IRF reporteractivity. The results of two experiments are shown (FIG. 1A).

Materials and Methods

HeLa cells were acquired from the ATCC (catalog no. CCL 2.2) and werecultured in DMEM containing 10% FBS. THP1-Dual cells, which are humanmonocytes that report on both the NfkB and IRF pathways, were purchasedfrom Invivogen (cat no. thpd-nfis) and were cultured in RPMI containing10% FBS and 100 μg/ml normocin.

Conclusion

HeLa cells cultured in PBS (nutrient-deprivation) elicited increased IRFtranscriptional activity in co-cultured THP1 monocytes (FIGS. 1A and1B).

Example 2: Conditioned Medium from Nutrient-Deprived HeLa Cells inCombination with the STING Agonist 2′3′-cGAMP Induces IRF and NfkBActivity in Human THP1 Monocytes Experimental Design

HeLa cervical cancer cells were grown in either DMEM containing 10% FBS(standard culture conditions), or in PBS (nutrient-deprivation) for 48hours. Conditioned media from each condition was then transferred toTHP1-Dual cells in the presence of 300 ng/ml of 2′3′-cGAMP (purchasedfrom Invivogen, cat no. tlrl-nacga23, and resuspended in water). THP1cells treated with conditioned media were incubated for an additional 24hours. THP1 supernatants were then assessed for NfkB or IRF reporteractivity.

Materials and Methods

HeLa cells were acquired from the ATCC (catalog no. CCL 2.2) and werecultured in DMEM containing 10% FBS. THP1-Dual cells, which are humanmonocytes that report on both the NfkB and IRF pathways, were purchasedfrom Invivogen (cat no. thpd-nfis) and were cultured in RPMI containing10% FBS and 100 μg/ml normocin.

To generate conditioned media, 3 million HeLa cells were seeded in a 10cm dish in DMEM containing 10% FBS. Cells were left overnight to adhereand then plates were washed 3× with PBS prior to replacing media witheither fresh DMEM containing 10% FBS, or with PBS. Cells were incubatedfor 48 hours, and then the conditioned media was removed, spun down andsterile filtered.

To measure IRF or NfkB pathway activation, 35,000 THP1-Dual cells/wellwere seeded in a 96-well plate (100 μl/well). 100 μl of HeLa conditionedmedia was transferred to each well, plus or minus 2′3′-cGAMP (300 ng/mlfinal concentration). After a 24 hour incubation period, IRF and NfkBactivity were measured. To measure IRF activity, 50 μl of THP1supernatant was transferred to a 96-well plate, and 50 μl of QuantiLucreagent was added to each well immediately prior to reading luminescenceby a platereader. To measure NfkB activity, 50 μl of THP1 supernatantwas transferred to a 96-well plate containing 200 μl of QuantiBluereagent. The plate was then incubated at room temperature for 2-3 hoursprior to reading the absorbance at 655 nm.

Conclusion

As shown in FIGS. 2A and 2B, treatment of THP1 monocytes withnutrient-starved HeLa cell conditioned media (grown in PBS) increasedIRF and NFκB signaling when tested in combination with 2′3′-cGAMP.Conditioned media from HeLa cells grown under standard cultureconditions (i.e. DMEM+10% FBS), on the other hand, only slightly inducedIRF and NFKB signaling when tested in combination with 2′3′-cGAMP.

Example 3: Nutrient-Deprived HeLa Cells in Combination with the STINGAgonist 2′3′-cGAMP Induces IFN-Beta Secretion from Human THP1 Monocytesor J774 Macrophages Experimental Design

HeLa cervical cancer cells were grown in PBS (nutrient-deprivation) for48 hours. THP1 cells were then treated with the HeLa-PBS (nutrientdeprived) conditioned media in the presence and absence of 2′3′-cGAMP.THP1 supernatants were then assayed for the secretion of IFN-beta, acytokine regulated by TRF. The same experiment was additionallyperformed using the mouse macrophage cell line J774 in place of the THP1cells.

Materials and Methods

HeLa cells were cultured in DMEM containing 10% FBS. THP1-Dual cellswere cultured in RPMI containing 10% FBS and 100 μg/ml normocin.

To generate conditioned media, 3 million HeLa cells were seeded in a 10cm dish in DMEM containing 10% FBS. Cells were left overnight to adhereand then plates were washed 3× with PBS prior to replacing media witheither fresh DMEM containing 10% FBS, or with PBS. Cells were incubatedfor 48 hours, and then the conditioned media was removed, spun down andsterile filtered.

500,000 THP1-Dual cells/well were seeded in a 24-well plate. 500 μl (1:1dilution) of each condition was added to the well (PBS; PBS+300 ng/mlcGAMP; HeLa-PBS CM; HeLa-PBS CM+300 ng/ml cGAMP) and incubated for 24hours. Cell supernatants were then spun down and sterile filtered priorto performing ELISA assay. ELISA assay was performed using the humanIFN-beta DuoSet ELISA kit (DY814-05) and following the protocol providedby the manufacturer.

The same experiment was additionally performed using J774 cells (ATCC,TIB-67). In brief 500,000 cells/well were seeded in a 24-well plate.After cell adherence, media was refreshed, and HeLa conditioned mediawas added either in the presence or absence of 2′3′-cGAMP (as describedabove). After 24 hours J774 supernatant was removed an assayed forIFN-beta secretion as described above.

Conclusion

As shown in FIGS. 3A and 3B, for both THP1 monocytes, and J774macrophages, IFN-beta secretion increased when cells were exposed toHeLa/PBS conditioned media in combination with 2′3′-cGAMP.

Example 4: Conditioned Medium from Nutrient-Deprived HeLa Cells inCombination with STING Agonist Cyclic Dinucleotides Induces IRF Activityin Human THP1 Monocytes Experimental Design

THP1 cells were treated with dose response curves of either a cyclicdinucleotide (CDN) alone or in combination with HeLa-PBS conditionedmedia. The CDNs used were all purchased from Invivogen: 2′3′-cGAMP(tlrl-nacga23), 3′3′-cGAMP (tlrl-nacga),2′3′-cyclic-di-GMP(tlrl-nacdg23), 3′3′cGAMP-fluorinated (tlrl-nacgaf),c-di-GMP-fluorinated (tlrl-nacdgf), and 2′3′-cGAM(PS)2(Rp/Sp)(tlrl-nacga2srs).

Materials and Methods

THP1-Dual cells (acquired from Invivogen) were seeded at 35,000cells/well in a 96-well plate (100 μl/well). In a separate treatmentplate, a 3-fold dose-response curve of each CDN was prepared, startingat 40 μg/ml, in either plain PBS or in combination with HeLa-PBSconditioned media (conditioned media prepared as previously described).100 μl of compound treatment was transferred to THP1 cells (1:1dilution) and cells were incubated for 24 hours. THP1 supernatants weresubsequently removed and assayed for IRF activity.

Conclusion

As shown in FIG. 4A-4F, each of the tested CDNs displayed IRF inducingactivity on its own in THP1-Dual cells, and each of these CDNs alsodisplayed synergistic activation of IRF when combined with HeLa-PBSconditioned media.

Example 5: Conditioned Medium from Multiple Types of Nutrient-DeprivedCells in Combination with the STING Agonist 2′3′-cGAMP Induces IRFActivity in Human THP1 Monocytes Experimental Design

THP1 cells were treated with the conditioned media of multiple celltypes in either DMEM containing 10% FBS (standard culture conditions),or PBS (nutrient deprivation) in combination with 2′3′-cGAMP (acquiredfrom Invivogen). THP1 cells were then assayed for induction of IRFactivity.

Materials and Methods

The cell types tested were as follows: A549 (human lung epithelialadenocarcinoma cells), A427 (human lung epithelial carcinoma cells),J774 (mouse macrophage cells), AMJ2C11 (mouse macrophage cells), PANC1(human pancreatic cancer cells), MLE12 (mouse lung epithelial cells),RAW264 (mouse leukemia cells), Calu-1 (human non-small-cell lung cancercells), MCF7 (human breast cancer cells). All cells were acquired fromATCC.

For each cell type, 3 million cells were plated in DMEM with 10% FBS ona 10 cm dish. After adherence, cells were washed 3× with PBS and mediawas replaced with either fresh DMEM containing 10% FBS, or with PBS.Cells were incubated for 48 hours prior to removal, centrifugation andsterile filtration of the conditioned media.

THP1-Dual cells were plated at 35,000 cells/well in 96-well format. Toeach well, 100 μl of conditioned media was added (in triplicate) in thepresence or absence of 2′3′-cGAMP (300 ng/ml). THP1-Dual cells were thenincubated for 24 hours with conditioned media prior to assaying IRFinduction.

Conclusion

As shown in FIG. 5A-5I, conditioned media from several differentnutrient-deprived cells in combination with 2′3′-cGAMP induced IRFactivation in human monocytes.

Example 6: Induction of IRF in Human THP1 Monocytes Mediated byConditioned Medium from Nutrient-Deprived Cells and the STING AgonistcGAMP is Inhibited by Subtype Specific Purinergic Receptor AntagonistsExperimental Design

THP1 cells were treated with cGAMP or cGAMP in combination with HeLa-PBSconditioned media, and then dosed with various purinergic receptorsantagonists. Purinergic receptors, of which there are many subtypes, areGPCRs that are activated by nucleotides and nucleotide analogs. Thepurinergic receptor antagonist compounds tested were all ordered fromTocris: AR-C 118925 (P2RY2 antagonist), MRS 2179 (P2RY1 antagonist),AR-C 69931 (P2Y12 antagonist), A740003 (P2RX7 antagonist)

Materials and Methods

THP1-Dual cells (acquired from Invivogen) were seeded at 35,000cells/well in a 96-well plate (100 μl/well). In a separate treatmentplate, a 3-fold dose-response curve of each purinergic receptorantagonist was prepared, starting at 20 μM, in either 2′3′-cGAMP aloneor 2′3′-cGAMP in combination with HeLa-PBS conditioned media(conditioned media prepared as described in examples above). 100 μl fromthe treatment plate was then transferred to THP1 cells (1:1 dilution),and the cells were incubated for 24 hours. THP1 supernatants wereremoved and tested for IRF activity.

Conclusion

As shown in FIGS. 6A-6D, the synergistic induction of IRF activity bycGAMP in combination with HeLa-PBS conditioned media was inhibited byAR-C 118925, which is a P2Y2 specific purinergic receptor antagonist.

Example 7: Combination of STING Agonist (cGAMP) and Purinergic ReceptorP2Y2 Agonist (PSB1114) Induces IRF Activity in Human THP1 MonocytesExperimental Design

THP1 cells were co-treated with cGAMP and a dose-response curve of anagonist of the purinergic receptor P2Y2, PSB 1114 (acquired fromTocris). After 24 hours, the THP1 supernatant was assayed for IRFinduction.

Materials and Methods

THP1 cells, acquired from Invivogen, were seeded at 35,000 cells/well in96-well format, in 100 μl media. In a separate treatment plate, a dosecurve of PSB 1114, starting at 20 μM, was prepared in either plain PBS,or in the presence of cGAMP. 100 μl from treatment plate was transferredto THP1 cells (1:1 dilution), and cells were incubated for 24 hoursprior to IRF and NfkB read-out.

Conclusion

As shown in FIGS. 7A and 7B, the combination of PSB 1114 (a P2Y2agonist) and 2′3′-cGAMP (a STING agonist) induced IRF signaling in humanTHP1 monocytes.

Example 8: Combination of STING Agonist (cGAMP) and Purinergic ReceptorP2Y2 Agonist (Diquafosol) Induces IRF Activity in Human THP1 MonocytesExperimental Design

THP1 cells were co-treated with cGAMP and a dose-response curve of theP2Y2 agonist Diquafosol. After 24 hours, THP1 supernatant was assayedfor IRF and NfkB induction.

Materials and Methods

THP1 cells, acquired from Invivogen, were seeded at 35,000 cells/well in96-well format, in 100 μl media. In a separate treatment plate, a dosecurve of Diquafosol (acquired from MedChemExpress), starting at 100 μM,was prepared in either plain PBS, or in the presence of cGAMP. 100 μlfrom treatment plate was transferred to THP1 cells (1:1 dilution), andcells were incubated for 24 hours prior to IRF and NfkB read-outs.

Conclusion

As depicted in FIGS. 8A-8B, a combination of the P2Y2 agonist Diquafosoland the STING agonist cGAMP induced IRF signaling in human monocytes. Ina related experiment, combinations of the STING agonist cGAMP withpurinergic receptor agonist nucleotide triphosphates also induced IRFsignaling in human monocytes (data not shown).

Example 9: Conditioned Medium from Nutrient Starved HeLa Cells inCombination with a STING Agonist (ADU-S100) Induces IRF Activity inHuman THP1 Monocytes Experimental Design

THP1 cells were co-treated with nutrient starved (PBS) HeLa conditionedmedia and a dose-response curve of the STING agonist ADU-S100 (acquiredfrom Chemietek). After 24 hours, the THP1 supernatant was assayed forIRF induction.

Materials and Methods

THP1 cells, acquired from Invivogen, were seeded at 35,000 cells/well in96-well format, in 100 μl media. In a separate treatment plate, a dosecurve of ADU-S100, starting at 20 μM, was prepared in either PBS, or inthe presence of nutrient-starved HeLa conditioned media. 100 μl from thetreatment plate was transferred to the THP1 cells (1:1 dilution), andthe cells were incubated for 24 hours prior to IRF reporter read-out.

Conclusion

As depicted in FIG. 9 , treatment of THP1 monocytes with nutrientstarved (PBS) HeLa conditioned media in combination with the STINGagonist ADU-S100 strongly increased IRF signaling.

Example 10: Combination of STING Agonist (ADU-S100) and PurinergicReceptor P2Y2 Agonist (Diquafosol) Induces IRF Activity in Human THP1Monocytes Experimental Design

THP1 cells were co-treated with ADU-S100 and a dose-response curve ofthe P2Y2 agonist Diquafosol. After 24 hours, the THP1 supernatant wasassayed for IRF induction.

Materials and Methods

THP1 cells, acquired from Invivogen, were seeded at 35,000 cells/well in96-well format, in 100 μl media. In a separate treatment plate, a dosecurve of Diquafosol (acquired from MedChemExpress), starting at 100 μM,was prepared in either plain PBS, or in the presence of ADU-S100 (2 μM).100 μl from the treatment plate was transferred to THP1 cells (1:1dilution), and the cells were incubated for 24 hours prior to IRF andNfkB read-outs.

Conclusion

As depicted in FIG. 10A-10B, the STING agonist ADU-S100 synergizes withthe P2Y2 agonist Diquafosol to induce IRF signaling in human monocytes.

Example 11: Method for Screening Nucleotides in Combination with theSTING Agonist cGAMP for Activation of Human THP1 Monocytes ExperimentalDesign

THP1 cells are co-treated with a dose-curve of various nucleotides inthe presence or absence of cGAMP. After 24 hours the THP1 supernatantsare assayed for IRF activity.

Materials and Methods

THP1 cells, acquired from Invivogen, are seeded at 35,000 cells/well in96-well format, in 100 μl media. In a separate treatment plate, a dosecurve of the indicated nucleotide is prepared in the presence of absenceof cGAMP. 100 μl from the treatment plate is transferred to THP1 cells(1:1) dilution, and the cells are incubated for 24 hours prior to IRFread-out.

Example 12: Induction of an Anti-Tumor/Pro-Inflammatory Response In Vivoby Treatment of 4T1 Breast Tumor Xenografts with Conditioned Medium fromNutrient Starved 4T1 Breast Cancer Cells and the STING Agonist ADU-S100

BALB/C mice are subcutaneously injected with 1×10⁶ 4T1 breast cancercells. Mice are dosed intratumorally by injection with Vehicle,conditioned medium from nutrient starved 4T1 breast cancer cells alone,or a combination of the conditioned medium and ADU-S100 when tumorsreach a median size of 150-200 mm³. The conditioned medium is preparedby culturing the 4T1 breast cancer cells in PBS (nutrient-deprivation)for 48 hours.

Forty-eight hours after dosing, immunophenotyping is performed on tumorinfiltrating cells, lymphocytes, and splenocytes to characterize therecruitment and activation status of myeloid and lymphoid cells.Immunophenotyping is performed either byimmunohistochemistry/immunofluorescence staining of tumor sections, orby first dissociating the tumor into single cell suspensions and thensubjecting the cells to flow cytometry (J Vis Exp., 2015, (98): 52657; JNatl Cancer Inst. 2015 Feb. 3; 107(3); Cancer Discov. 2012 July;2(7):608-23.). Compared to vehicle, an induction of a pro-inflammatoryresponse by conditioned medium from nutrient starved 4T1 breast cancercells alone or in combination with ADU-S100 is assessed by an increasedrecruitment of monocytes, macrophages and T cells into the tumormicroenvironment. Further, anti-tumor immune responses are assessed bydetermining increases in activation markers in macrophages, (MHCII andCD80) CD11+CD103+ Dendritic cells (MHCII) and in both CD4 and CD8 Tcells (Ki67 and CD69) without concomitant activation ofCD4+FoxP3+T-regulatory cells. In addition, the inhibition of tumorgrowth by conditioned medium from nutrient starved 4T1 breast cancercells alone or in combination with ADU-S100 is assessed by measurementsof tumor size over a three-week period or until tumors reach a maximumsize of 2000 mm³.

Example 13: Induction of a Systemic Anti-Tumor/Pro-Inflammatory ResponseIn Vivo by Local Treatment of 4T1 Breast Tumor Xenografts withConditioned Medium from Nutrient Starved 4T1 Breast Cancer Cells and theSTING Agonist ADU-S100

BALB/C mice are subcutaneously injected with 1×10⁶ 4T1 breast cancercells at two different sites within the body. Mice are dosedintratumorally with Vehicle, conditioned medium from nutrient starved4T1 breast cancer cells alone, or a combination of the conditionedmedium and ADU-S100 at one tumor site when tumors reach a median size of150-200 mm³. The conditioned medium is prepared by culturing the 4T1breast cancer cells in PBS (nutrient-deprivation) for 48 hours. Theinhibition of tumor growth by conditioned medium from nutrient starved4T1 breast cancer cells alone or in combination with ADU-S100 isassessed by measurements of tumor size of both the treated andnon-treated (contralateral) tumor over a three-week period or untiltumors reach a maximum size of 2000 mm³. In addition, engagement ofsystemic adaptive immune responses is assessed by analyzing the tumorinfiltrating lymphocytes (TILs) within the contralateral tumor site.Therapeutically relevant adaptive immune responses in the contralateraltumor are assessed by either quantitative increases in T effector cellnumber (FoxP3-CD4+ T cells, CD8+ T cells) or by increased activationstatus of T cells (CD69, ki67), macrophages (MHCII and CD80) orCD11+CD103+ Dendritic cells (MHCII).

Example 14: Use of Conditioned Medium from Nutrient Starved MelanomaCells and the STING Agonist ADU-S100 to Treat Melanoma in a HumanClinical Trial

A randomized controlled trial (RCT) is conducted to evaluate the safetyand efficacy of conditioned medium from nutrient starved melanoma cellsalone or in combination with ADU-S100 following multiple infusions ofconditioned medium from nutrient starved melanoma cells alone, incombination with ADU-S100 or in further combination with pembrolizumab,compared to multiple infusions of pembrolizumab, in the treatment ofmelanoma patients that have failed 1 or 2 cancer treatment regimens. Theconditioned medium is prepared by culturing melanoma cells in PBS(nutrient-deprivation) for 48 hours.

One hundred patients with advanced RCC that failed cancer treatmentregimens were randomized to receive conditioned medium from nutrientstarved melanoma cells alone, a combination of the conditioned mediumwith ADU-S100, pembrolizumab alone, conditioned medium from nutrientstarved renal carcinoma cells in combination with pembrolizumab, or acombination of the conditioned medium, ADU-S100 and pembrolizumab.Patients are required to have not received prior treatment withpembrolizumab and not have active autoimmune disease or medicalconditions requiring systemic immunosuppression. Tumor assessments beginon week 8 following commencement of therapy and continue every 8 weeksthereafter for the first year and every 12 weeks until progression ortreatment discontinuation. The efficacy of the conditioned medium fromnutrient starved melanoma cells is assessed by assessment of overallsurvival rates.

Example 15: Induction of Anti-Tumor Immune Response In Vivo byConditioned Medium from B16.BL6 Melanoma Cells, the STING AgonistADU-S100 and Anti-CTLA4 Antibody (9D9) Treatment of B16.BL6 MelanomaTumor Xenografts

C57/BL6 mice are subcutaneously injected with 1×10⁵ B16.BL6 melanomacells. Mice are dosed intratumorally with Vehicle, conditioned mediumfrom B16.BL6 melanoma cells, ADU-S100, a combination of the conditionedmedium and ADU-S100, anti-CTLA4 antibody 9D9 (10 mg/kg, i.p.), acombination of conditioned medium from B16.BL6 melanoma cells and 9D9,or a combination of the conditioned medium, ADU-S100 and 9D9. Theconditioned medium is prepared by culturing the B16.BL6 melanoma cellsin PBS for 48 hours. Mice are dosed when tumors reach a median size of150-200 mm³. 48 hours later immunophenotyping is performed on tumorinfiltrating cells, lymphocytes and splenocytes to characterize therecruitment and activation status of myeloid and lymphoid cells.Compared to vehicle, an induction of a maximal pro-inflammatory responseby the combinations of conditioned medium from B16.BL6 melanoma cells,ADU-S100 and 9D9 treatment is assessed by an increased recruitment ofCD3+ T cells into the tumor microenvironment compared to each treatmentalone. In addition, the maximal inhibition of tumor growth by thecombination therapies compared to each treatment alone is assessed bymeasurements of tumor size over a three-week period or until tumorsreach a maximum size of 2000 mm³.

Example 16: Induction of an Anti-Tumor/Pro-Inflammatory Response In Vivoby Treatment of 4T1 Breast Tumor Xenografts with a Combination of aSTING Agonist (ADU-S100) and a Purinergic Receptor P2Y2 Agonist(Diquafosol)

BALB/C mice are subcutaneously injected with 1×10⁶ 4T1 breast cancercells. Mice are dosed intratumorally by injection with Vehicle or acombination of ADU-S100 and Diquafosol when tumors reach a median sizeof 150-200 mm³. 48 hours later immunophenotyping is performed on tumorinfiltrating cells, lymphocytes, and splenocytes to characterize therecruitment and activation status of myeloid and lymphoid cells.Immunophenotyping is performed either byimmunohistochemistry/immunofluorescence staining of tumor sections, orby first dissociating the tumor into single cell suspensions and thensubjecting the cells to flow cytometry (J Vis Exp., 2015, (98): 52657; JNatl Cancer Inst. 2015 Feb. 3; 107(3); Cancer Discov. 2012 July;2(7):608-23.). Compared to vehicle, an induction of a pro-inflammatoryresponse by ADU-S100 and Diquafosol treatment is assessed by anincreased recruitment of monocytes, macrophages and T cells into thetumor microenvironment. Further, anti-tumor immune responses areassessed by determining increases in activation markers in macrophages,(MHCII and CD80) CD11+CD103+ Dendritic cells (MHCII) and in both CD4 andCD8 T cells (Ki67 and CD69) without concomitant activation ofCD4+FoxP3+T-regulatory cells. Further, enhanced IRF response isconfirmed by increases in cytokine expression, particularly type Iinterferon (e.g. IFNβ). In addition, the inhibition of tumor growth byADU-S100 and Diquafosol is assessed by measurements of tumor size over athree-week period or until tumors reach a maximum size of 2000 mm³.

Example 17: Induction of a Systemic Anti-Tumor/Pro-Inflammatory ResponseIn Vivo by Local Treatment of 4T1 Breast Tumor Xenografts with aCombination of a STING Agonist (ADU-S100) and a Purinergic Receptor P2Y2Agonist (Diquafosol)

BALB/C mice are subcutaneously injected with 1×10⁶ 4T1 breast cancercells at two different sites within the body. Mice are dosedintratumorally with Vehicle or ADU-5100 and Diquafosol at one tumor sitewhen tumors reach a median size of 150-200 mm³. The inhibition of tumorgrowth by ADU-5100 and Diquafosol is assessed by measurements of tumorsize of both the treated and non-treated (contralateral) tumor over athree-week period or until tumors reach a maximum size of 2000 mm³. Inaddition, engagement of systemic adaptive immune responses is assessedby analyzing the tumor infiltrating lymphocytes (TILs) within thecontralateral tumor site. Therapeutically relevant adaptive immuneresponses in the contralateral tumor are assessed by either quantitativeincreases in T effector cell number (FoxP3-CD4+ T cells, CD8+ T cells)or by increased activation status of T cells (CD69, ki67), macrophages(MHCII and CD80) or CD11+CD103+ Dendritic cells (MHCII).

Example 18: Use of a Combination of a STING Agonist (ADU-S100) and aPurinergic Receptor P2Y2 Agonist (Diquafosol) to Treat Melanoma in aHuman Clinical Trial

A randomized controlled trial (RCT) is conducted to evaluate the safetyand efficacy of ADU-S100 and Diquafosol following multiple infusions ofa combination of ADU-S100 and Diquafosol alone or in further combinationwith pembrolizumab, compared to multiple infusions of pembrolizumab, inthe treatment of melanoma patients that have failed 1 or 2 cancertreatment regimens.

One hundred patients with advanced melanoma that failed cancer treatmentregimens are randomized to receive either a combination of ADU-5100 andDiquafosol alone, pembrolizumab alone or ADU-S100 and Diquafosol infurther combination with pembrolizumab. Patients are required to havenot received prior treatment with pembrolizumab and not have activeautoimmune disease or medical conditions requiring systemicimmunosuppression. Tumor assessments begin on week 8 followingcommencement of therapy and continue every 8 weeks thereafter for thefirst year and every 12 weeks until progression or treatmentdiscontinuation. The efficacy of the combination of ADU-S100 andDiquafosol is assessed by assessment of overall survival rates.

Example 19: Induction of Anti-Tumor Immune Response In Vivo by aCombination of a STING Agonist (ADU-S100), a Purinergic Receptor P2Y2Agonist (Diquafosol), and Anti-CTLA4 Antibody (9D9) Treatment of B16.BL6Melanoma Tumor Xenografts

C57/BL6 mice are subcutaneously injected with 1×10⁵ B16.BL6 melanomacells. Mice are dosed intratumorally with Vehicle, a combination ofADU-S100 and Diquafosol, anti-CTLA4 antibody 9D9 (10 mg/kg, i.p.), or acombination of ADU-S100, Diquafosol and 9D9. Mice are dosed when tumorsreach a median size of 150-200 mm³. 48 hours later immunophenotyping isperformed on tumor infiltrating cells, lymphocytes and splenocytes tocharacterize the recruitment and activation status of myeloid andlymphoid cells. Compared to vehicle, an induction of a maximalpro-inflammatory response by the combination of ADU-S100, Diquafosol and9D9 treatment is assessed by an increased recruitment of CD3+ T cellsinto the tumor microenvironment compared to either treatment alone. Inaddition, the maximal inhibition of tumor growth by the combinationtherapy compared to either treatment alone is assessed by measurementsof tumor size over a three-week period or until tumors reach a maximumsize of 2000 mm³.

Example 20: Testing the Inhibition of Pro-Inflammatory Signaling by aPurinergic Receptor P2Y2 Antagonist (AR-C 118925), Alone or inCombination with a STING Antagonist (H-151), in an In Vivo Model ofInjury and Regeneration

C57/BL6 mice are treated with either vehicle, a purinergic receptor P2Y2antagonist (AR-C 118925), or a combination of a STING antagonist (H-151)and purinergic receptor P2Y2 antagonist (AR-C 118925) by intraperitonealinjection and subjected to a renal ischemia-reperfusion injury. Briefly,mice are exposed by flank incision and clamped for 60 minutes. Afterreleasing the clamp, flank incisions are closed with sutures. Shamsurgeries are performed in a similar manner but without clamping renalvessels. Inflammation of the outer medulla is assessed 2 days and 7 dayspost-surgery. The anti-inflammatory effect of the purinergic receptorP2Y2 antagonist (AR-C 118925) or the combination of the STING antagonistand the purinergic receptor antagonist is assessed by a decrease inmacrophage and neutrophil recruitment as assessed by histology (F4/80staining for macrophages and Napthol AS-D chloroacetate esterasestaining) and/or flow-cytometry.

Example 21: Testing the Inhibition of Ulcerative Colitis in Mice by aPurinergic Receptor P2Y2 Antagonist (AR-C 118925), Alone or inCombination with a STING Antagonist (H-151)

C57/B6 mice are treated with vehicle, a purinergic receptor P2Y2antagonist (AR-C 118925), or a combination of a STING antagonist (H-151)and purinergic receptor P2Y2 antagonist (AR-C 118925), byintraperitoneal injection before the induction of colitis byadministration of 3-4% dextran sodium sulfate in the drinking water for5 days. An anti-inflammatory effect of the purinergic receptor P2Y2antagonist (AR-C 118925), and of the combination of the STING antagonistand the purinergic receptor antagonist, as compared to vehicle isassessed by decreased colon length, decreased diarrhea, and decreasedweight loss. In addition, inhibition of neutrophil recruitment (innateimmune response) by the purinergic receptor P2Y2 antagonist (AR-C118925) or the combination of the STING antagonist and the purinergicreceptor antagonist is assessed by decreased myeloperoxidase activity inthe colon (compared to vehicle).

Example 22: Effects of a STING Agonist (ADU-S100), a Purinergic Receptor(P2Y2) Agonist (Diquafosol), and Combinations Thereof on Tumor Growthand Survival in a Mouse Model of Cancer

Test BALB/c mice were injected subcutaneously in the right flank with1×10⁶ A20 B-cell lymphoma tumor cells (in a 0.1 mL cell suspension).Sixteen days after tumor cell implantation, on Day 1 of the study,animals were sorted into ten groups (n=10) with individual tumor volumesbetween 48 and 100 mm³ and a group mean tumor volume of 81 mm³. Fivegroups of mice were dosed according in the following treatment groups.

-   -   Group 1 received Vehicle (PBS) intratumorally once per day.    -   Group 2 received 1 μg/kg of the STING agonist (ADU-S100)        intratumorally once per day.    -   Group 3 received 50 μg/kg of the STING agonist (ADU-S100)        intratumorally once per day.    -   Group 4 received 10 mg/animal of the purinergic receptor agonist        (diquafosol testrasodium) intratumorally once per day.    -   Group 5 received 1 μg/kg ADU-S100 intratumorally combined with        10 mg/animal of diquafosol testrasodium intratumorally once per        day.

ADU-S100 and Diquafosol tetrasodium were dosed intratumorally (itu) in atotal volume of 50 μL of therapeutic agents; combination therapies wereadministered as single injections containing 2×25 μL of 2× dosingsolutions.

Tumors were measured using calipers twice per week.

Results

As shown in FIG. 12 , the combination of the P2Y2 agonist and the lowerdose of the STING agonist (Group 5) had a much greater effect onincreasing survival relative to the P2Y2 agonist alone (10 mg/animal ofdiquafosol testrasodium, Group 4) or the lower dose of the STING agonistalone (1 μg/kg of ADU-S100, Group 2).

Conclusions

Combination of a STING agonist and a purinergic receptor (P2Y2) agonisthad a greater effect on improving survival in a mouse model of cancerthan either compound alone.

EQUIVALENTS

Those skilled in the art will recognize, or be able to ascertain usingno more than routine experimentation, many equivalents to the specificembodiments and methods described herein. Such equivalents are intendedto be encompassed by the scope of the following claims.

INCORPORATION BY REFERENCE

Each reference, patent, and patent application referred to in theinstant application is hereby incorporated by reference in its entiretyas if each reference were noted to be incorporated individually.

1. A method of increasing immune activity in a target cell, tissue or subject, the method comprising administering to the target cell, tissue or subject, in combination (a) a Stimulator of Interferon Genes (STING) agonist and (b) a P2Y2 receptor agonist, wherein the STING agonist and the P2Y2 receptor agonist are administered in an amount sufficient to increase the immune activity relative to a cell, tissue or subject that is not treated with the STING agonist and/or the P2Y2 receptor agonist.
 2. A method of increasing the level or activity of RF or STING in a target cell, tissue or subject, comprising administering to the target cell, tissue or subject, in combination (a) a Stimulator of Interferon Genes (STING) agonist and (b) a P2Y2 receptor agonist, wherein the STING agonist and the P2Y2 receptor agonist are administered in an amount sufficient to increase the level or activity of RF or STING relative to a cell, tissue or subject that is not treated with the STING agonist and/or the P2Y2 receptor agonist.
 3. A method of treating a subject in need of increased immune activity, the method comprising administering to the subject, in combination (a) a Stimulator of Interferon Genes (STING) agonist and (b) a P2Y2 receptor agonist, wherein the STING agonist and the P2Y2 receptor agonist are administered in an amount sufficient to increase the immune activity in the subject relative to a subject that is not treated with the STING agonist and/or the P2Y2 receptor agonist. 4-6. (canceled)
 7. The method of claim 3, wherein the subject has a chronic infection.
 8. The method of claim 7, wherein the chronic infection is selected from HIV infection, HCV infection, HBV infection, HPV infection, Hepatitis B infection, Hepatitis C infection, EBV infection, CMV infection, TB infection, and infection with a parasite.
 9. A method of treating a subject diagnosed with cancer, comprising administering to the subject, in combination (a) a Stimulator of Interferon Genes (STING) agonist and (b) a P2Y2 receptor agonist, thereby treating the cancer in the subject.
 10. The method of claim 9, wherein the STING agonist and the P2Y2 receptor agonist act synergistically.
 11. The method of claim 9, wherein a response of the cancer to treatment is improved relative to a treatment with the STING agonist alone or the P2Y2 receptor agonist alone.
 12. (canceled)
 13. The method of claim 11, wherein the response comprises any one or more of reduction in tumor burden, reduction in tumor size, inhibition of tumor growth, achievement of stable cancer in a subject with a progressive cancer prior to treatment, increased time to progression of the cancer, and increased time of survival.
 14. The method of claim 9, wherein the cancer is a cancer responsive to an immune checkpoint therapy.
 15. The method of claim 9, wherein the cancer is selected from a carcinoma, sarcoma, lymphoma, melanoma, and leukemia.
 16. The method of claim 9, wherein: (a) the STING agonist is a cyclic dinucleotide, optionally wherein the cyclic dinucleotide is selected from the group consisting of cGAMP, 2′3′-cGAMP, 3′3′-cGAMP, 3′3′-cGAMP-F, c-di-GMP, c-di-GMP-F, Rp/Sp, MK-1454, ADU-S100, and Disodium dithio-(RP, RP)-[cyclic [A(2′,5′)pA(3′,5′)p]] [Rp,Rp]-Cyclic(adenosine-(2′,5′) monophosphorothioateadenosine-(3′,5′)-monophosphorothioate) (disodium ADU-S100); (b) the STING agonist is a flavonoid, optionally wherein the flavonoid is selected from the group consisting of 10-(carboxymethyl)-9(10H)acridone (CMA), 5,6-Dimethylxanthenone-4-acetic acid (DMXAA) or vadimezan, methoxyvone, 6, 4′-dimethoxyflavone, 4′-methoxyflavone, 3′, 6′-dihydroxyflavone, 7, 2′-dihydroxyflavone, daidzein, formononetin, retusin 7-methyl ether, xanthone, or any combination thereof; (c) the STING agonist is an amidobenzimidazole compound or a dimeric amidobenzimidizole compound; (d) the STING agonist is DNA; or (e) the STING agonist is a type I interferon (IFN), optionally wherein the type I IFN is interferon-β or interferon-α. 17-23. (canceled)
 24. The method of claim 9, wherein the P2Y2 receptor agonist is a small molecule. 25-30. (canceled)
 31. The method of 9, wherein the P2Y2, receptor agonist is a compound selected from the following:

or a pharmaceutically acceptable salt thereof. 32-35. (canceled)
 36. The method of claim 9, wherein the subject is human.
 37. The method of claim 1, wherein the STING agonist and the P2Y2 receptor agonist are administered in an amount sufficient to increase in the cell, tissue or subject one or more of: the level or activity of type I interferon, the level or activity of TBK1, the level or activity of IRF, the level or activity of NFkB, the level or activity of macrophages, the level or activity of monocytes, the level or activity of dendritic cells, the level or activity of T cells, the level or activity of CD4+, CD8+ or CD3+ cells, and the level or activity of a pro-immune cytokine.
 38. The method of claim 9, further comprising administering an immunotherapeutic to the subject.
 39. The method of claim 38, wherein the immunotherapeutic is selected from the group consisting of a Toll-like receptor (TLR) agonist, a cell-based therapy, a cytokine, a cancer vaccine, and an immune checkpoint modulator of an immune checkpoint molecule.
 40. (canceled)
 41. The method of claim 39, wherein the immune checkpoint molecule is selected from CD27, CD28, CD40, CD122, OX40, GITR, ICOS, 4-1BB, ADORA2A, B7-H3, B7-H4, BTLA, CTLA-4, IDO, KIR, LAG-3, PD-1, PD-L1, PD-L2, TIM-3, and VISTA. 42-43. (canceled)
 44. The method of claim 39, wherein the immune checkpoint modulator is selected from a small molecule, an inhibitory RNA, an antisense molecule, and an immune checkpoint molecule binding protein.
 45. The method of claim 39, wherein: a) the immune checkpoint molecule is PD-1 and the immune checkpoint modulator is a PD-1 inhibitor, optionally wherein the PD-1 inhibitor is selected from pembrolizumab, nivolumab, pidilizumab, SHR-1210, MEDI0680R01, BBg-A317, TSR-042, REGN2810 and PF-06801591; b) the immune checkpoint molecule is PD-L1 and the immune checkpoint modulator is a PD-L1 inhibitor, optionally wherein the PD-L1 inhibitor is selected from durvalumab, atezolizumab, avelumab, MDX-1105, AMP-224 and LY3300054; or c) the immune checkpoint molecule is CTLA-4 and the immune checkpoint modulator is a CTLA-4 inhibitor, optionally wherein the CTLA-4 inhibitor is selected from ipilimumab, tremelimumab, JMW-3B3 and AGEN1884. 46-198. (canceled) 